Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc19g08
         (481 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z36949-2|CAA85416.1|  184|Caenorhabditis elegans Hypothetical pr...   151   3e-37
AF003130-2|AAB54125.2|  426|Caenorhabditis elegans Adaptin, mu/m...    34   0.061
Z46812-1|CAA86843.1| 1405|Caenorhabditis elegans Hypothetical pr...    27   9.3  

>Z36949-2|CAA85416.1|  184|Caenorhabditis elegans Hypothetical
           protein F59E10.3 protein.
          Length = 184

 Score =  151 bits (366), Expect = 3e-37
 Identities = 65/117 (55%), Positives = 97/117 (82%), Gaps = 1/117 (0%)
 Frame = +1

Query: 127 TLYIVKGMCILDYEGNRILAXYYDKDVLPTTKEQKAFEKNLFNKTHR-ANAEIIMLDGLT 303
           +LY +KG+ ILD +GNR+LA YYD+    T KEQKAFEK+LF+KT R  +A+I++LDG+T
Sbjct: 10  SLYSIKGIVILDQDGNRVLAKYYDRTTFGTVKEQKAFEKSLFSKTSRNTSADILLLDGVT 69

Query: 304 CVYKSNVDLFFYVMGSSHENELILQSVLNALYESVSLLLRRNMERRVLMENLDAVML 474
           C+Y+SNVDL+FYV+GS+ ENEL L + L  LY++VS++LR+N+E++ L++++D +ML
Sbjct: 70  CLYRSNVDLYFYVLGSTRENELFLDATLTCLYDAVSVVLRKNVEKKALIDSMDTIML 126


>AF003130-2|AAB54125.2|  426|Caenorhabditis elegans Adaptin,
           mu/medium chain (clathrinassociated complex) protein 1
           protein.
          Length = 426

 Score = 33.9 bits (74), Expect = 0.061
 Identities = 25/109 (22%), Positives = 54/109 (49%), Gaps = 3/109 (2%)
 Frame = +1

Query: 139 VKGMCILDYEGNRILAXYYDKDVLPTTKEQKAFEKNLFNKTHRANAE-IIMLDGLTCVYK 315
           + G+ ILD +GN +++  Y  DV  +  E+  F   L  K    +A  +++  G++  Y 
Sbjct: 3   ISGLFILDLKGNVVISRNYRGDVDMSCIEK--FMPLLVEKEDEGSASPVLVHQGISYTYI 60

Query: 316 SNVDLFFYVMGSSHENELILQSVLNALYESVSLLLR--RNMERRVLMEN 456
             ++++   +   + N ++   VL+ALY+ V +     + +E   + +N
Sbjct: 61  KYMNVYLVTISKKNTNVIL---VLSALYKIVEVFCEYFKTLEEEAVRDN 106


>Z46812-1|CAA86843.1| 1405|Caenorhabditis elegans Hypothetical
           protein ZK675.1 protein.
          Length = 1405

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 11/31 (35%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
 Frame = +2

Query: 128 HCTLSRGCAF-WTMKETEFWPNITIKTSYPQ 217
           +C   R  AF W  K  + WP +  +  YPQ
Sbjct: 485 YCKSYRKSAFEWLKKNKDKWPEVMSENMYPQ 515


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,239,246
Number of Sequences: 27780
Number of extensions: 231713
Number of successful extensions: 451
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 438
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 450
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 882200194
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)