Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc19g04
         (471 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_25063| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   0.84 
SB_36803| Best HMM Match : RhoGAP (HMM E-Value=0)                      29   1.9  
SB_13327| Best HMM Match : Viral_cys_rich (HMM E-Value=8.3)            29   1.9  

>SB_25063| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1203

 Score = 30.3 bits (65), Expect = 0.84
 Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 3/53 (5%)
 Frame = +3

Query: 222 DAYHD-DGWFICNSHLIKRFKMSKMVLP--IFDEDDNQFKMTIARHLVGNKER 371
           DA  D  GW++    L+K+F+ S+M     + D+D   ++  +   L  NKE+
Sbjct: 186 DASSDFKGWYLLKKQLLKKFENSRMATKKLVSDDDGTPYRKKMKLSLKVNKEQ 238


>SB_36803| Best HMM Match : RhoGAP (HMM E-Value=0)
          Length = 1277

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 21/67 (31%), Positives = 31/67 (46%), Gaps = 1/67 (1%)
 Frame = +3

Query: 180 SFDACITYKSPC-SPDAYHDDGWFICNSHLIKRFKMSKMVLPIFDEDDNQFKMTIARHLV 356
           SFD+ I   +P    ++ H  G  I  S +      S  V  IFD+DD    +T+ R+  
Sbjct: 316 SFDSGIVQNNPSFKSNSLHSVGQRITTSTITP----STTVNLIFDDDDGDGGLTVTRYAS 371

Query: 357 GNKERGI 377
           GN   G+
Sbjct: 372 GNAFSGV 378


>SB_13327| Best HMM Match : Viral_cys_rich (HMM E-Value=8.3)
          Length = 321

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 19/56 (33%), Positives = 29/56 (51%)
 Frame = +3

Query: 234 DDGWFICNSHLIKRFKMSKMVLPIFDEDDNQFKMTIARHLVGNKERGIKRILIPSA 401
           DD  F  NS   KR     + L +F +    F +T A  ++G+K R + R+LIP +
Sbjct: 141 DDAGFGPNSST-KRRPTFPVDLNLFQDLYMHFNLTEANLVLGSKVRNVLRVLIPKS 195


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,125,490
Number of Sequences: 59808
Number of extensions: 273401
Number of successful extensions: 548
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 525
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 546
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 982083920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)