Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc19g03
         (598 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17H9.08 |||mitochondrial coenzyme A transporter|Schizosaccha...    27   1.6  
SPBC28F2.08c |||HRD ubiquitin ligase complex subunit |Schizosacc...    25   6.3  
SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||...    25   6.3  
SPCC830.08c |||Golgi membrane protein |Schizosaccharomyces pombe...    25   8.4  
SPCC594.07c |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    25   8.4  

>SPAC17H9.08 |||mitochondrial coenzyme A
           transporter|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 326

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 16/58 (27%), Positives = 25/58 (43%), Gaps = 3/58 (5%)
 Frame = +3

Query: 342 T*GCLGNSAVSS---VHSWTNTSYYCVRSKTITSTGARHRLRYSFHNYCLHGFQSSHT 506
           T GC+  S V+    V     T++   R    +  G    +++ +H Y LHG    HT
Sbjct: 26  TAGCVAKSVVAPLDRVKILYQTNHASYRGYAYSRHGLYKAIKHIYHVYGLHGLYQGHT 83


>SPBC28F2.08c |||HRD ubiquitin ligase complex subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 713

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 12/30 (40%), Positives = 15/30 (50%)
 Frame = -1

Query: 367 AELPKQPQVLL*DRVPQAPKTLECSRDRSS 278
           ++LP +P  L  DR PQ P   E S    S
Sbjct: 620 SQLPPEPPTLQVDRTPQQPDPQETSESLPS 649


>SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1367

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 10/35 (28%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
 Frame = -2

Query: 333 KIECPKHPKHWNVL-EIVQVSASHSFNVGVIVLHL 232
           K++CP  PK WN+  ++ Q+    S   G +  ++
Sbjct: 575 KLDCPCSPKSWNISDDLGQIEYIFSDKTGTLTQNI 609


>SPCC830.08c |||Golgi membrane protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 182

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 10/28 (35%), Positives = 19/28 (67%), Gaps = 2/28 (7%)
 Frame = +1

Query: 298 IPVFWVLGALYL--TTAPEAAWATLLFR 375
           +PV+W+L A++L     P+   AT+++R
Sbjct: 111 VPVYWLLKAIFLIWLALPKFNGATIIYR 138


>SPCC594.07c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 255

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = +1

Query: 289 LENIPVFWVLGALYLTTAPEAAWATLL 369
           L   PV+ +L   YLT   + AWA ++
Sbjct: 79  LTKYPVYVLLSTYYLTPLSQIAWAFII 105


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,550,644
Number of Sequences: 5004
Number of extensions: 53127
Number of successful extensions: 155
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 150
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 155
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 260219058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)