Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc19g03
         (598 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1495 + 26983415-26984797                                         29   2.1  
03_02_0304 - 7273008-7273257,7273367-7273524,7273668-7273734,727...    29   2.1  
10_02_0189 - 6486737-6486916,6486988-6487260,6487364-6487576,648...    29   2.8  
12_02_0795 + 23217463-23217684,23218296-23219155,23220001-232209...    28   6.5  
12_01_0386 + 3023431-3023522,3023951-3024097,3024227-3024308,302...    28   6.5  

>07_03_1495 + 26983415-26984797
          Length = 460

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 16/39 (41%), Positives = 22/39 (56%)
 Frame = +1

Query: 172 RVRYAKKVFANEEDAKRTKGKVKYDDPDVERVRRAHLND 288
           R +  K+VFA EED +    +V  DD D E  +RA  N+
Sbjct: 247 RAKLVKRVFAAEEDEEDLSWEV--DDEDEEEQQRAEANE 283


>03_02_0304 -
           7273008-7273257,7273367-7273524,7273668-7273734,
           7274461-7274645,7274801-7275215,7275311-7275418,
           7275557-7275792,7275888-7275914
          Length = 481

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = +3

Query: 348 GCLGNSAVSSVHSWTNTSYYCVRSKTITSTG 440
           GCLGN    SV  W + + +CV    + S G
Sbjct: 257 GCLGNKGAVSVRFWLHDTSFCVACCHLASGG 287


>10_02_0189 -
           6486737-6486916,6486988-6487260,6487364-6487576,
           6489081-6489206
          Length = 263

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 13/38 (34%), Positives = 18/38 (47%), Gaps = 3/38 (7%)
 Frame = -2

Query: 408 NSMKYSSSC---VHSKQQSCPSSLRCCCKIECPKHPKH 304
           N +++S S    +H   Q C   LR  C + CP H  H
Sbjct: 128 NLVEFSESVGQPIHQLDQLCGQCLRSFCGVSCPNHLVH 165


>12_02_0795 +
           23217463-23217684,23218296-23219155,23220001-23220929,
           23221184-23221968
          Length = 931

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 15/47 (31%), Positives = 22/47 (46%)
 Frame = +1

Query: 208 EDAKRTKGKVKYDDPDVERVRRAHLNDLENIPVFWVLGALYLTTAPE 348
           E  + + G     DPDVE +RR      +++P       LYL+  PE
Sbjct: 478 ERVRNSIGSTLQKDPDVEEMRRILSLSYDDLPQHLKTCLLYLSIFPE 524


>12_01_0386 +
           3023431-3023522,3023951-3024097,3024227-3024308,
           3024801-3024842,3024930-3024989,3025430-3027109,
           3027239-3027340,3027461-3027604,3027704-3027829,
           3027933-3028100
          Length = 880

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 20/68 (29%), Positives = 28/68 (41%), Gaps = 1/68 (1%)
 Frame = +3

Query: 321 GTLSYNST*GCLGNSAVSSVHSWTNTSYYCV-RSKTITSTGARHRLRYSFHNYCLHGFQS 497
           G L   ST   L N  +SSV  +         RS  + S  A++ L     +  LHG  S
Sbjct: 132 GVLQLGSTSVILEN--ISSVQQYKKLCCQLNNRSSMVASASAKNDLSQKVQSRSLHGLPS 189

Query: 498 SHTFYNCF 521
            H +  C+
Sbjct: 190 IHPYEQCY 197


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,734,966
Number of Sequences: 37544
Number of extensions: 321664
Number of successful extensions: 909
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 885
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 909
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1423789920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)