Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc19g03
(598 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_19100| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.40
SB_5373| Best HMM Match : Lung_7-TM_R (HMM E-Value=6.6) 31 0.53
SB_52684| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.71
SB_52148| Best HMM Match : EGF (HMM E-Value=0) 31 0.71
SB_34801| Best HMM Match : Vicilin_N (HMM E-Value=0.3) 31 0.71
SB_5429| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.71
SB_5103| Best HMM Match : Vicilin_N (HMM E-Value=0.36) 31 0.71
SB_12399| Best HMM Match : DUF885 (HMM E-Value=2.3e-08) 31 0.93
SB_23459| Best HMM Match : Glyco_hydro_18 (HMM E-Value=0.17) 29 2.2
SB_44456| Best HMM Match : PQQ (HMM E-Value=0.73) 29 2.2
SB_19130| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.8
SB_8793| Best HMM Match : C1_1 (HMM E-Value=0.21) 29 3.8
SB_45442| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.6
SB_20511| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.6
SB_14228| Best HMM Match : Zim (HMM E-Value=3.4) 28 6.6
SB_8862| Best HMM Match : rve (HMM E-Value=3.3e-12) 28 6.6
SB_4914| Best HMM Match : RVT_1 (HMM E-Value=2.5e-16) 28 6.6
SB_151| Best HMM Match : zf-CCHC (HMM E-Value=8.9e-05) 28 6.6
SB_39486| Best HMM Match : PsiF_repeat (HMM E-Value=5.9) 27 8.7
SB_30| Best HMM Match : DNA_pol_delta_4 (HMM E-Value=2.2) 27 8.7
SB_58364| Best HMM Match : WD40 (HMM E-Value=2.8026e-45) 27 8.7
SB_12894| Best HMM Match : FH2 (HMM E-Value=1.9) 27 8.7
>SB_19100| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 137
Score = 31.9 bits (69), Expect = 0.40
Identities = 14/42 (33%), Positives = 20/42 (47%)
Frame = +3
Query: 414 RSKTITSTGARHRLRYSFHNYCLHGFQSSHTFYNCFVAIYLV 539
RSK + + G R+RY FHN+ Q+ F YL+
Sbjct: 9 RSKQLIARGCHRRIRYGFHNFSWSKIQNYQFSKQVFSRAYLI 50
>SB_5373| Best HMM Match : Lung_7-TM_R (HMM E-Value=6.6)
Length = 303
Score = 31.5 bits (68), Expect = 0.53
Identities = 25/72 (34%), Positives = 35/72 (48%), Gaps = 1/72 (1%)
Frame = +1
Query: 94 DPTVQSYILYSGILGLKLLAVTILTGRVRYAKKVFANEEDAKRTKGKVKY-DDPDVERVR 270
D V IL S ILGL L T T V ++KV N+E+ +K KV Y ++ V
Sbjct: 208 DRAVNVSILVSEILGLPLPESTTETKTVNTSEKVSNNKENFNSSK-KVSYNENQTVNTSE 266
Query: 271 RAHLNDLENIPV 306
+ N+ E + V
Sbjct: 267 KVSYNENETVTV 278
>SB_52684| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 245
Score = 31.1 bits (67), Expect = 0.71
Identities = 19/46 (41%), Positives = 28/46 (60%)
Frame = -1
Query: 370 TAELPKQPQVLL*DRVPQAPKTLECSRDRSSERVSLVQRRGHRTSP 233
T +L +QP + R+P A T E SR+ + ++SL+QRRGH P
Sbjct: 86 TRQLRRQPSPIR-IRIPAAQSTEETSRNLA--QLSLLQRRGHPPLP 128
>SB_52148| Best HMM Match : EGF (HMM E-Value=0)
Length = 1055
Score = 31.1 bits (67), Expect = 0.71
Identities = 13/46 (28%), Positives = 22/46 (47%)
Frame = +3
Query: 351 CLGNSAVSSVHSWTNTSYYCVRSKTITSTGARHRLRYSFHNYCLHG 488
CL N ++ V T+++Y C + T H + + N C+HG
Sbjct: 961 CLSNPCLNGVCVSTSSTYTCRCTVGFKGTRCEHAMNTCYSNPCIHG 1006
>SB_34801| Best HMM Match : Vicilin_N (HMM E-Value=0.3)
Length = 451
Score = 31.1 bits (67), Expect = 0.71
Identities = 19/46 (41%), Positives = 28/46 (60%)
Frame = -1
Query: 370 TAELPKQPQVLL*DRVPQAPKTLECSRDRSSERVSLVQRRGHRTSP 233
T +L +QP + R+P A T E SR+ + ++SL+QRRGH P
Sbjct: 332 TRQLRRQPSPIR-IRIPTAQSTEETSRNLA--QLSLLQRRGHPPLP 374
>SB_5429| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 263
Score = 31.1 bits (67), Expect = 0.71
Identities = 19/46 (41%), Positives = 28/46 (60%)
Frame = -1
Query: 370 TAELPKQPQVLL*DRVPQAPKTLECSRDRSSERVSLVQRRGHRTSP 233
T +L +QP + R+P A T E SR+ + ++SL+QRRGH P
Sbjct: 104 TRQLRRQPSPIR-VRIPTAQSTEETSRNLA--QLSLLQRRGHPPLP 146
>SB_5103| Best HMM Match : Vicilin_N (HMM E-Value=0.36)
Length = 592
Score = 31.1 bits (67), Expect = 0.71
Identities = 19/46 (41%), Positives = 28/46 (60%)
Frame = -1
Query: 370 TAELPKQPQVLL*DRVPQAPKTLECSRDRSSERVSLVQRRGHRTSP 233
T +L +QP + R+P A T E SR+ + ++SL+QRRGH P
Sbjct: 436 TRQLRRQPSPIR-VRIPTAQSTEETSRNLA--QLSLLQRRGHPPLP 478
>SB_12399| Best HMM Match : DUF885 (HMM E-Value=2.3e-08)
Length = 718
Score = 30.7 bits (66), Expect = 0.93
Identities = 17/65 (26%), Positives = 29/65 (44%), Gaps = 2/65 (3%)
Frame = +1
Query: 319 GALYLTTAPEAAW-ATLLFRVYTAGRILHTIVYAVKPLPQPARGIAFGIPFIITVY-MGF 492
GA YL + + T + Y LH + + P P I + +PF++ Y + F
Sbjct: 503 GAFYLAPPEDGSRPGTFMVNTYKHEESLHPVPFMFITYPVPLMVITYPVPFMVITYPVPF 562
Query: 493 KVVTH 507
V+T+
Sbjct: 563 MVITY 567
>SB_23459| Best HMM Match : Glyco_hydro_18 (HMM E-Value=0.17)
Length = 797
Score = 29.5 bits (63), Expect = 2.2
Identities = 36/121 (29%), Positives = 52/121 (42%), Gaps = 4/121 (3%)
Frame = +1
Query: 4 SDGNIRVVNIVFYQHHLTYKT*SMV----SINLSDPTVQSYILYSGILGLKLLAVTILTG 171
SD I ++V Y++ L T SM +IN V ++ + GILGLK + G
Sbjct: 407 SDLAINTQSVVGYKNKLQKATDSMTLGANAINTEKKPVGAHNMAGGILGLKPVTNPSGHG 466
Query: 172 RVRYAKKVFANEEDAKRTKGKVKYDDPDVERVRRAHLNDLENIPVFWVLGALYLTTAPEA 351
R+A++ N D +R Y PD L D + VF LYL+ A +
Sbjct: 467 GERFAERRH-NGRDRRR------YGQPDSGDGET--LQDTNHYDVFKTYEELYLSKADDK 517
Query: 352 A 354
A
Sbjct: 518 A 518
>SB_44456| Best HMM Match : PQQ (HMM E-Value=0.73)
Length = 551
Score = 29.5 bits (63), Expect = 2.2
Identities = 19/49 (38%), Positives = 27/49 (55%)
Frame = -1
Query: 379 TLETAELPKQPQVLL*DRVPQAPKTLECSRDRSSERVSLVQRRGHRTSP 233
T + P P+V R+P A T E SR+ + ++SL+QRRGH P
Sbjct: 396 TRQLRRQPSPPRV----RIPTAQSTEETSRNLA--QLSLLQRRGHPPLP 438
>SB_19130| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 658
Score = 28.7 bits (61), Expect = 3.8
Identities = 12/19 (63%), Positives = 15/19 (78%)
Frame = +1
Query: 229 GKVKYDDPDVERVRRAHLN 285
GK+KYDDP E+VR+A N
Sbjct: 373 GKMKYDDPLFEKVRQAKEN 391
>SB_8793| Best HMM Match : C1_1 (HMM E-Value=0.21)
Length = 260
Score = 28.7 bits (61), Expect = 3.8
Identities = 12/46 (26%), Positives = 23/46 (50%)
Frame = +2
Query: 2 IRTEISELSTLCSINII*PTKHKVWCPLISVILPCNRTFYIRVFWV 139
+R ++ LCS+ ++ + V C + V L C+ FY+ +V
Sbjct: 163 VRLAFMFVALLCSLRLLCSLRFHVRCAFLLVALSCSSCFYVHCAFV 208
>SB_45442| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1103
Score = 27.9 bits (59), Expect = 6.6
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = -3
Query: 557 LFHVETYQIYCYKAVIKCVTTLKPM*TVIMKGIPKAMPR 441
+F E + +Y Y A I +T KP+ ++ K + K PR
Sbjct: 651 VFGCERFNMYTYGADIDVMTDHKPLESIFRKPLHKVPPR 689
>SB_20511| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 511
Score = 27.9 bits (59), Expect = 6.6
Identities = 19/56 (33%), Positives = 26/56 (46%), Gaps = 8/56 (14%)
Frame = -1
Query: 364 ELPKQPQVLL*DRVPQAPKTLECS------RDRSSERVSLVQRR--GHRTSPCPLC 221
+L KQPQ+ R+P A K C + R S+ + RR G + CPLC
Sbjct: 430 KLSKQPQITPQKRLPNADKPFYCPWRNCGWKFRRSDELKRHYRRHTGEKPYACPLC 485
>SB_14228| Best HMM Match : Zim (HMM E-Value=3.4)
Length = 406
Score = 27.9 bits (59), Expect = 6.6
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = -3
Query: 557 LFHVETYQIYCYKAVIKCVTTLKPM*TVIMKGIPKAMPR 441
+F E +Q Y Y ++ + KP+ T++ K I A PR
Sbjct: 212 VFAAERFQQYIYGKEVEVESDQKPLETILDKPIENASPR 250
>SB_8862| Best HMM Match : rve (HMM E-Value=3.3e-12)
Length = 1358
Score = 27.9 bits (59), Expect = 6.6
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = -3
Query: 557 LFHVETYQIYCYKAVIKCVTTLKPM*TVIMKGIPKAMPR 441
+F E + +Y Y A I +T KP+ ++ K + K PR
Sbjct: 841 VFGCERFNMYTYGADIDVMTDHKPLESIFRKPLHKVPPR 879
>SB_4914| Best HMM Match : RVT_1 (HMM E-Value=2.5e-16)
Length = 548
Score = 27.9 bits (59), Expect = 6.6
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = -3
Query: 557 LFHVETYQIYCYKAVIKCVTTLKPM*TVIMKGIPKAMPR 441
+F E + +Y Y A I +T KP+ ++ K + K PR
Sbjct: 362 VFGCERFNMYTYGADIDVMTDHKPLESIFRKPLHKVPPR 400
>SB_151| Best HMM Match : zf-CCHC (HMM E-Value=8.9e-05)
Length = 1382
Score = 27.9 bits (59), Expect = 6.6
Identities = 15/37 (40%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Frame = -1
Query: 328 RVPQAPKTLECSRDRSSERVSLVQ-RRGHRTSPCPLC 221
R+P++ +L SRD +RV ++ R G R CPLC
Sbjct: 170 RLPRSKPSLMVSRDDIDQRVEKIRAREGKRV--CPLC 204
>SB_39486| Best HMM Match : PsiF_repeat (HMM E-Value=5.9)
Length = 91
Score = 27.5 bits (58), Expect = 8.7
Identities = 11/34 (32%), Positives = 18/34 (52%)
Frame = -1
Query: 328 RVPQAPKTLECSRDRSSERVSLVQRRGHRTSPCP 227
R ++ CS DR+ R++ +R HR+S P
Sbjct: 18 RTSACSRSRSCSADRTEPRLTAQERHHHRSSSVP 51
>SB_30| Best HMM Match : DNA_pol_delta_4 (HMM E-Value=2.2)
Length = 269
Score = 27.5 bits (58), Expect = 8.7
Identities = 11/34 (32%), Positives = 18/34 (52%)
Frame = -1
Query: 328 RVPQAPKTLECSRDRSSERVSLVQRRGHRTSPCP 227
R ++ CS DR+ R++ +R HR+S P
Sbjct: 18 RTSACSRSRSCSADRTEPRLTAQERHHHRSSSVP 51
>SB_58364| Best HMM Match : WD40 (HMM E-Value=2.8026e-45)
Length = 426
Score = 27.5 bits (58), Expect = 8.7
Identities = 14/51 (27%), Positives = 23/51 (45%)
Frame = -2
Query: 420 YCVHNSMKYSSSCVHSKQQSCPSSLRCCCKIECPKHPKHWNVLEIVQVSAS 268
+ HN+ S + + SSL +I CP +PK N++E +S
Sbjct: 347 FWTHNAKITSIAWSQDSKHIASSSLDTNIRISCPNNPKAKNLIEAAHPKSS 397
>SB_12894| Best HMM Match : FH2 (HMM E-Value=1.9)
Length = 408
Score = 27.5 bits (58), Expect = 8.7
Identities = 11/19 (57%), Positives = 15/19 (78%)
Frame = -2
Query: 528 LLQSSYKMCDYFETHVDSN 472
LL+ S +CD+FETH+ SN
Sbjct: 387 LLRPSAIVCDHFETHLRSN 405
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,065,765
Number of Sequences: 59808
Number of extensions: 406013
Number of successful extensions: 1125
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 1021
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1125
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1439498375
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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