Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc19g03
         (598 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z72517-8|CAA96697.2| 1883|Caenorhabditis elegans Hypothetical pr...    28   5.8  
Z72503-12|CAA96600.2| 1883|Caenorhabditis elegans Hypothetical p...    28   5.8  
AF024499-3|AAB70357.1|  374|Caenorhabditis elegans Hypothetical ...    28   5.8  
Z70286-6|CAA94293.1| 3672|Caenorhabditis elegans Hypothetical pr...    27   7.7  
Z70286-5|CAB61016.1| 3704|Caenorhabditis elegans Hypothetical pr...    27   7.7  
AF101305-5|AAF98597.2|  341|Caenorhabditis elegans Serpentine re...    27   7.7  
AB016806-1|BAA32347.1| 3704|Caenorhabditis elegans laminin alpha...    27   7.7  
AB001074-1|BAA19229.1| 3704|Caenorhabditis elegans laminin alpha...    27   7.7  

>Z72517-8|CAA96697.2| 1883|Caenorhabditis elegans Hypothetical
           protein C26C6.1a protein.
          Length = 1883

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 17/55 (30%), Positives = 27/55 (49%)
 Frame = -3

Query: 272 RLTRSTSGSSYFTLPFVRFASSSFANTFLA*RTLPVNIVTANNFKPKIPEYKMYD 108
           R  RS++G++     F+R     F   +      P+++ T  + K KIPEY  YD
Sbjct: 54  RKHRSSAGNNSVFESFLRLPPRRFEPEYYEQVKEPIDVTTIQH-KLKIPEYLTYD 107


>Z72503-12|CAA96600.2| 1883|Caenorhabditis elegans Hypothetical
           protein C26C6.1a protein.
          Length = 1883

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 17/55 (30%), Positives = 27/55 (49%)
 Frame = -3

Query: 272 RLTRSTSGSSYFTLPFVRFASSSFANTFLA*RTLPVNIVTANNFKPKIPEYKMYD 108
           R  RS++G++     F+R     F   +      P+++ T  + K KIPEY  YD
Sbjct: 54  RKHRSSAGNNSVFESFLRLPPRRFEPEYYEQVKEPIDVTTIQH-KLKIPEYLTYD 107


>AF024499-3|AAB70357.1|  374|Caenorhabditis elegans Hypothetical
           protein F42G2.5 protein.
          Length = 374

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 16/46 (34%), Positives = 19/46 (41%)
 Frame = -2

Query: 414 VHNSMKYSSSCVHSKQQSCPSSLRCCCKIECPKHPKHWNVLEIVQV 277
           V N +     C HS  QSC S L   C I CP      NV  +  +
Sbjct: 145 VDNQIPRILQCGHSICQSCASKLAKNCVILCPFCRNETNVSSVASL 190


>Z70286-6|CAA94293.1| 3672|Caenorhabditis elegans Hypothetical protein
            K08C7.3b protein.
          Length = 3672

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 23/65 (35%), Positives = 29/65 (44%), Gaps = 9/65 (13%)
 Frame = -2

Query: 468  ERNTEGDASRRLR*WFYCVHNSMKYSSSCVHSK--QQSCPS-SLRCCCKI-----ECPK- 316
            E+NT+G        WFY    + K  SSC  S+   Q C + S  C CKI      C + 
Sbjct: 1962 EQNTDGRHCESCAAWFYGDAVTAKNCSSCECSQCGSQYCDNKSGGCECKINVEGDSCDRC 2021

Query: 315  HPKHW 301
             P HW
Sbjct: 2022 KPDHW 2026


>Z70286-5|CAB61016.1| 3704|Caenorhabditis elegans Hypothetical protein
            K08C7.3a protein.
          Length = 3704

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 23/65 (35%), Positives = 29/65 (44%), Gaps = 9/65 (13%)
 Frame = -2

Query: 468  ERNTEGDASRRLR*WFYCVHNSMKYSSSCVHSK--QQSCPS-SLRCCCKI-----ECPK- 316
            E+NT+G        WFY    + K  SSC  S+   Q C + S  C CKI      C + 
Sbjct: 1962 EQNTDGRHCESCAAWFYGDAVTAKNCSSCECSQCGSQYCDNKSGGCECKINVEGDSCDRC 2021

Query: 315  HPKHW 301
             P HW
Sbjct: 2022 KPDHW 2026


>AF101305-5|AAF98597.2|  341|Caenorhabditis elegans Serpentine
           receptor, class ab (class a-like) protein 3 protein.
          Length = 341

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 11/38 (28%), Positives = 18/38 (47%)
 Frame = +3

Query: 402 YYCVRSKTITSTGARHRLRYSFHNYCLHGFQSSHTFYN 515
           YY + +  IT    + R  +  +NY  H F   H F++
Sbjct: 284 YYIILAALITRVDRKPRSEFKVNNYETHHFVELHKFFD 321


>AB016806-1|BAA32347.1| 3704|Caenorhabditis elegans laminin alpha
            chain protein.
          Length = 3704

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 23/65 (35%), Positives = 29/65 (44%), Gaps = 9/65 (13%)
 Frame = -2

Query: 468  ERNTEGDASRRLR*WFYCVHNSMKYSSSCVHSK--QQSCPS-SLRCCCKI-----ECPK- 316
            E+NT+G        WFY    + K  SSC  S+   Q C + S  C CKI      C + 
Sbjct: 1962 EQNTDGRHCESCAAWFYGDAVTAKNCSSCECSQCGSQYCDNKSGGCECKINVEGDSCDRC 2021

Query: 315  HPKHW 301
             P HW
Sbjct: 2022 KPDHW 2026


>AB001074-1|BAA19229.1| 3704|Caenorhabditis elegans laminin alpha
            protein.
          Length = 3704

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 23/65 (35%), Positives = 29/65 (44%), Gaps = 9/65 (13%)
 Frame = -2

Query: 468  ERNTEGDASRRLR*WFYCVHNSMKYSSSCVHSK--QQSCPS-SLRCCCKI-----ECPK- 316
            E+NT+G        WFY    + K  SSC  S+   Q C + S  C CKI      C + 
Sbjct: 1962 EQNTDGRHCESCAAWFYGDAVTAKNCSSCECSQCGSQYCDNKSGGCECKINVEGDSCDRC 2021

Query: 315  HPKHW 301
             P HW
Sbjct: 2022 KPDHW 2026


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,099,038
Number of Sequences: 27780
Number of extensions: 301591
Number of successful extensions: 950
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 911
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 950
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1268802960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)