Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc19f23
         (600 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22H10.03c |kap114||karyopherin Kap14|Schizosaccharomyces pom...    29   0.52 
SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces po...    28   0.91 
SPAC6F6.06c |rax2||cell polarity factor Rax2|Schizosaccharomyces...    27   2.1  
SPAC30C2.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    26   3.7  
SPAC2G11.02 |urb2||ribosome biogenesis protein Urb2 |Schizosacch...    26   3.7  
SPBC19G7.01c |msh2|swi8, mut3, SPBC24C6.12c|MutS protein homolog...    26   3.7  
SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-gluca...    26   4.8  

>SPAC22H10.03c |kap114||karyopherin Kap14|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 986

 Score = 29.1 bits (62), Expect = 0.52
 Identities = 27/96 (28%), Positives = 42/96 (43%), Gaps = 5/96 (5%)
 Frame = +3

Query: 219 ECLTDDQCDKFTYFAE----LKQEQALFMKKVYKHLVLKNEGVFNKHHVLFDAMIMYKTY 386
           + +  D C  F    E    L + + LF  K+  ++V   E V+N    L D  I    +
Sbjct: 246 QVILPDSCGYFCIMGEIAMTLTKLRELFPSKLTPYVVTFVELVWNIIEKLLDPYIREVVF 305

Query: 387 VNLVDESAFGSNV-INYCEQFITAIFEIFTLSSKIV 491
            + +D+SAFG    I Y  + +  +F    L SK V
Sbjct: 306 SDGLDDSAFGDKYPIRYLVELL--LFVSVALQSKFV 339


>SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1014

 Score = 28.3 bits (60), Expect = 0.91
 Identities = 16/56 (28%), Positives = 31/56 (55%)
 Frame = +3

Query: 297 KVYKHLVLKNEGVFNKHHVLFDAMIMYKTYVNLVDESAFGSNVINYCEQFITAIFE 464
           KVY+  + +N  +FNK  +L  A    + Y++L+++ +  S       Q+IT ++E
Sbjct: 244 KVYETTLKRNAKIFNKELLLNSANHSLEAYMDLINDESRRSTAE---LQYITTLYE 296


>SPAC6F6.06c |rax2||cell polarity factor Rax2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1155

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 13/51 (25%), Positives = 22/51 (43%)
 Frame = +3

Query: 405 SAFGSNVINYCEQFITAIFEIFTLSSKIVVAVPVNWENDNLSVLLKHLHNL 557
           S FG+    +C+      +  FT S K        W   N +V ++H +N+
Sbjct: 120 SFFGNISAIFCDDKFPYAYATFTFSDKPSFTSIYRWNVTNSNVTIEHFYNV 170


>SPAC30C2.07 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 842

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 12/39 (30%), Positives = 18/39 (46%)
 Frame = +3

Query: 441 QFITAIFEIFTLSSKIVVAVPVNWENDNLSVLLKHLHNL 557
           Q + A  + ++L    +   P  WEND    LLK  H +
Sbjct: 750 QLMVANLDTYSLDCYEIHEFPSEWENDYAPFLLKEHHKV 788


>SPAC2G11.02 |urb2||ribosome biogenesis protein Urb2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1318

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = +1

Query: 394 WSTSLRSAATLLTIANSLSRPFSKFLRSAVKSL 492
           WSTS    ++LL I   +  P SK L   +KS+
Sbjct: 359 WSTSWEMLSSLLAIDFDVLLPHSKILWECIKSV 391



 Score = 25.8 bits (54), Expect = 4.8
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = +3

Query: 180  DADEPIIYFENITECLTDDQCDKFTYFAELK 272
            DAD  I+   NI   LT ++CD+F Y   +K
Sbjct: 1023 DADYAIL---NILNLLTSNECDEFDYSVLMK 1050


>SPBC19G7.01c |msh2|swi8, mut3, SPBC24C6.12c|MutS protein homolog
           2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 982

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 10/43 (23%), Positives = 29/43 (67%), Gaps = 3/43 (6%)
 Frame = -2

Query: 446 KLFAIVNNVAAERR-LVDQIHICLIHNHC--IEQYVVFVKNAL 327
           K+  +++++ +E + LVD+++  +++NHC  +E+ +  V+  +
Sbjct: 432 KIVTVLDSLTSEHKDLVDKVYTNVLNNHCKNLEKLIELVETTI 474


>SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-glucan
            synthase Ags1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 2410

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 17/77 (22%), Positives = 40/77 (51%), Gaps = 4/77 (5%)
 Frame = -2

Query: 413  ERRLVDQIHICLIHNHCIEQYVVFVKNALVFKHQV----FVYFFHK*GLLLFEFSKISKL 246
            E +++DQ +   +++H ++     + +A VF+ Q     +       G  +F +S  ++ 
Sbjct: 1205 EVKIIDQTYTINVYHHYLDNIKYVLLDAPVFRRQTSKEPYPARMDDLGSAIF-YSAWNQC 1263

Query: 245  VALVVRKTFCNIFEINN 195
            +A V+R+   +I+ IN+
Sbjct: 1264 IAEVIRRNPIDIYHIND 1280


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,422,464
Number of Sequences: 5004
Number of extensions: 49681
Number of successful extensions: 145
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 145
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 262236260
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)