Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc19f23
         (600 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_8500| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   6.6  
SB_7052| Best HMM Match : LRR_1 (HMM E-Value=2e-12)                    28   6.6  
SB_40294| Best HMM Match : RhoGEF (HMM E-Value=7.5e-08)                27   8.8  
SB_16725| Best HMM Match : DAGAT (HMM E-Value=1e-39)                   27   8.8  
SB_27531| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.8  

>SB_8500| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3408

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 15/34 (44%), Positives = 17/34 (50%)
 Frame = +3

Query: 162  YVSADTDADEPIIYFENITECLTDDQCDKFTYFA 263
            YV+   D D  I YF N  E  + DQ  KF  FA
Sbjct: 3294 YVAGIKDTDLHIEYFWNALENFSQDQLRKFIKFA 3327


>SB_7052| Best HMM Match : LRR_1 (HMM E-Value=2e-12)
          Length = 1328

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = -2

Query: 449 DKLFAIVNNVAAERRLVDQIHICLIH 372
           ++LF I+ N ++ RRLVD    CL H
Sbjct: 558 ERLFFILENFSSNRRLVDLASQCLWH 583


>SB_40294| Best HMM Match : RhoGEF (HMM E-Value=7.5e-08)
          Length = 389

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 12/36 (33%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
 Frame = +3

Query: 210 NITECLTD-DQCDKFTYFAELKQEQALFMKKVYKHL 314
           NI EC  +  +  +F  + +  QEQ     K+Y+HL
Sbjct: 84  NIGECFEEMAEAAEFEVYEQFAQEQTALASKLYRHL 119


>SB_16725| Best HMM Match : DAGAT (HMM E-Value=1e-39)
          Length = 571

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = +3

Query: 348 HVLFDAMIMYKTYVNLVDESAFGSNVI 428
           H  F  ++ Y+T VN+VDES  G++ +
Sbjct: 434 HGRFGILMPYRTPVNIVDESLLGTSQV 460


>SB_27531| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 186

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 18/53 (33%), Positives = 24/53 (45%), Gaps = 4/53 (7%)
 Frame = +3

Query: 132 LCQAPATASL-YVSADTDADEPIIYFENIT---ECLTDDQCDKFTYFAELKQE 278
           +C  P T +    S+  DAD P IY  NIT     +  D  D    F++ K E
Sbjct: 44  ICGGPLTGNNGSFSSPEDADNPSIYMTNITCFWHLIIPDGSDAVISFSKFKTE 96


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,745,765
Number of Sequences: 59808
Number of extensions: 358558
Number of successful extensions: 934
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 880
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 934
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1451595000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)