Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc19f23
         (600 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.         23   3.0  
AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly pro...    23   3.0  
AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly pro...    23   3.0  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    21   9.2  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    21   9.2  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    21   9.2  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    21   9.2  
AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.    21   9.2  

>D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.
          Length = 432

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 13/53 (24%), Positives = 26/53 (49%), Gaps = 4/53 (7%)
 Frame = +3

Query: 81  KSGVSGIMATSKTIVLYLCQAPATASLYVSAD----TDADEPIIYFENITECL 227
           + G+SG+  +  T  LY     +T+  YV+ +    +D  +  I++E +   L
Sbjct: 250 QDGISGMALSPMTNNLYYSPVASTSLYYVNTEQFRTSDYQQNDIHYEGVQNIL 302


>AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 13/53 (24%), Positives = 26/53 (49%), Gaps = 4/53 (7%)
 Frame = +3

Query: 81  KSGVSGIMATSKTIVLYLCQAPATASLYVSAD----TDADEPIIYFENITECL 227
           + G+SG+  +  T  LY     +T+  YV+ +    +D  +  I++E +   L
Sbjct: 250 QDGISGMALSPMTNNLYYSPVASTSLYYVNTEQFRTSDYQQNDIHYEGVQNIL 302


>AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 13/53 (24%), Positives = 26/53 (49%), Gaps = 4/53 (7%)
 Frame = +3

Query: 81  KSGVSGIMATSKTIVLYLCQAPATASLYVSAD----TDADEPIIYFENITECL 227
           + G+SG+  +  T  LY     +T+  YV+ +    +D  +  I++E +   L
Sbjct: 250 QDGISGMALSPMTNNLYYSPVASTSLYYVNTEQFRTSDYQQNDIHYEGVQNIL 302


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +3

Query: 78   EKSGVSGIMATSKTIVLYLCQAPATA 155
            EK+GVS +    +   L+   +PATA
Sbjct: 1237 EKTGVSTLRGQERQRSLFKDSSPATA 1262


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 7/19 (36%), Positives = 14/19 (73%)
 Frame = -2

Query: 254 SKLVALVVRKTFCNIFEIN 198
           ++ VA V  +T+CN+F ++
Sbjct: 529 ARRVASVRAETYCNLFSLS 547


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 11/23 (47%), Positives = 12/23 (52%)
 Frame = +1

Query: 445 LSRPFSKFLRSAVKSLWPCPSIG 513
           +SRP  K  R A KS  P P  G
Sbjct: 346 MSRPSDKEEREAQKSQKPSPVTG 368


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 7/19 (36%), Positives = 14/19 (73%)
 Frame = -2

Query: 254 SKLVALVVRKTFCNIFEIN 198
           ++ VA V  +T+CN+F ++
Sbjct: 497 ARRVASVRAETYCNLFSLS 515


>AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.
          Length = 615

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = +3

Query: 471 TLSSKIVVAVPVNWEND 521
           TL+SK  +  PV W ND
Sbjct: 463 TLNSKDPLDPPVIWSND 479


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 162,718
Number of Sequences: 438
Number of extensions: 3333
Number of successful extensions: 11
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17604432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)