Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc19f23
         (600 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g13490.1 68416.m01697 tRNA synthetase class II (D, K and N) f...    34   0.063
At1g11450.1 68414.m01315 nodulin MtN21 family protein similar to...    32   0.33 
At3g17360.1 68416.m02218 kinesin motor protein-related similar t...    29   1.8  
At1g07900.1 68414.m00859 LOB domain protein 1 / lateral organ bo...    28   4.1  
At5g24120.1 68418.m02835 RNA polymerase sigma subunit SigE (sigE...    27   7.2  
At4g04340.3 68417.m00621 early-responsive to dehydration protein...    27   9.5  
At4g04340.2 68417.m00620 early-responsive to dehydration protein...    27   9.5  
At4g04340.1 68417.m00619 early-responsive to dehydration protein...    27   9.5  

>At3g13490.1 68416.m01697 tRNA synthetase class II (D, K and N)
           family protein similar to SP|Q9RHV9 Lysyl-tRNA
           synthetase (EC 6.1.1.6) (Lysine--tRNA ligase) {Bacillus
           stearothermophilus}; contains Pfam profile: PF00152 tRNA
           synthetases class II (D, K and N)
          Length = 602

 Score = 34.3 bits (75), Expect = 0.063
 Identities = 19/90 (21%), Positives = 40/90 (44%), Gaps = 1/90 (1%)
 Frame = +3

Query: 294 KKVYK-HLVLKNEGVFNKHHVLFDAMIMYKTYVNLVDESAFGSNVINYCEQFITAIFEIF 470
           +KVY+   + +NEG+  +H+  F  + MY+ Y +          ++  C   +     I 
Sbjct: 321 EKVYEIGRIFRNEGISTRHNPEFTTIEMYEAYSDYHSMMDMAELIVTQCSMAVNGKLTID 380

Query: 471 TLSSKIVVAVPVNWENDNLSVLLKHLHNLN 560
              ++I +  P  W  + +  L+K +  +N
Sbjct: 381 YQGTEICLERP--WRRETMHNLVKEITGIN 408


>At1g11450.1 68414.m01315 nodulin MtN21 family protein similar to
           GI:2598575 MtN21 (GI:2598575) {Medicago truncatula}
          Length = 260

 Score = 31.9 bits (69), Expect = 0.33
 Identities = 25/87 (28%), Positives = 40/87 (45%), Gaps = 3/87 (3%)
 Frame = -3

Query: 340 LKTPSFLSTKCLYTFFINKACSCLSSAK*VNLSHW---SSVRHSVIFSK*IIGSSASVSA 170
           +K P   S+ CL + F    C+ LS  K  +L HW         VI    +IG + S  A
Sbjct: 121 IKYPCKFSSTCLMSIFAAFQCALLSLYKSRDLKHWIIDDGFVIGVIIYAGVIGQAMSTVA 180

Query: 169 LTYNDAVAGA*HKYSTIVLLVAMIPLT 89
            T+     GA   +++ ++ V++I  T
Sbjct: 181 ATWGINRLGA--VFASAIMPVSLISAT 205


>At3g17360.1 68416.m02218 kinesin motor protein-related similar to
            KLP2 protein GB:CAA63826 from [Xenopus laevis]
          Length = 2008

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 15/52 (28%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
 Frame = -2

Query: 479  AERKNFENGRDKLFAIVNNVAAERRL-VDQIHICLIHNHCIEQYVVFVKNAL 327
            + +++ +N  D+LF  +  V  E  L   Q+H   +HN  +E   + +K AL
Sbjct: 1468 SNKRDIKNEMDELFDALCKVQLELELKASQVHELFVHNENLENCSIDLKTAL 1519


>At1g07900.1 68414.m00859 LOB domain protein 1 / lateral organ
           boundaries domain protein 1 (LBD1) identical to
           SP|Q9LQR0 LOB domain protein 1 {Arabidopsis thaliana}
          Length = 190

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 16/52 (30%), Positives = 23/52 (44%), Gaps = 2/52 (3%)
 Frame = +1

Query: 40  DETNTTNSCLCNEKKAASAVSWRLAKRSCCIC--VRRRPQRRCTLAPTRTPT 189
           D +  T   + +      ++S R+    C  C  +RRR   RC LAP   PT
Sbjct: 6   DASVATTPIISSSSSPPPSLSPRVVLSPCAACKILRRRCAERCVLAPYFPPT 57


>At5g24120.1 68418.m02835 RNA polymerase sigma subunit SigE (sigE) /
           sigma-like factor (SIG5) identical to RNA polymerase
           sigma subunit SigE [Arabidopsis thaliana] GI:4972299,
           sigma-like factor [Arabidopsis thaliana] GI:4033838;
           contains Pfam profiles PF04545: Sigma-70, region 4,
           PF04539: Sigma-70 region 3, PF04542: Sigma-70 region 2
          Length = 517

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 15/46 (32%), Positives = 21/46 (45%)
 Frame = -2

Query: 506 DGHGHNDFTAERKNFENGRDKLFAIVNNVAAERRLVDQIHICLIHN 369
           DG      +  RK  E+G +K   + NNV  E+R+     I L  N
Sbjct: 124 DGGSKAKVSRRRKRKESGEEKKVVVRNNVKKEKRMSLDKRIALKRN 169


>At4g04340.3 68417.m00621 early-responsive to dehydration
           protein-related / ERD protein-related similar to ERD4
           protein (early-responsive to dehydration stress)
           [Arabidopsis thaliana] GI:15375406; contains Pfam
           profile PF02714: Domain of unknown function DUF221
          Length = 772

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = +3

Query: 492 VAVPVNWENDNLSVLLKHLHNLNLIGIE 575
           V VPVNW N+ L  L KH  N+    I+
Sbjct: 119 VLVPVNWTNNELE-LAKHFKNVTSSDID 145


>At4g04340.2 68417.m00620 early-responsive to dehydration
           protein-related / ERD protein-related similar to ERD4
           protein (early-responsive to dehydration stress)
           [Arabidopsis thaliana] GI:15375406; contains Pfam
           profile PF02714: Domain of unknown function DUF221
          Length = 772

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = +3

Query: 492 VAVPVNWENDNLSVLLKHLHNLNLIGIE 575
           V VPVNW N+ L  L KH  N+    I+
Sbjct: 119 VLVPVNWTNNELE-LAKHFKNVTSSDID 145


>At4g04340.1 68417.m00619 early-responsive to dehydration
           protein-related / ERD protein-related similar to ERD4
           protein (early-responsive to dehydration stress)
           [Arabidopsis thaliana] GI:15375406; contains Pfam
           profile PF02714: Domain of unknown function DUF221
          Length = 772

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = +3

Query: 492 VAVPVNWENDNLSVLLKHLHNLNLIGIE 575
           V VPVNW N+ L  L KH  N+    I+
Sbjct: 119 VLVPVNWTNNELE-LAKHFKNVTSSDID 145


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,145,306
Number of Sequences: 28952
Number of extensions: 236381
Number of successful extensions: 636
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 630
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 636
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1187288784
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)