Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc19f22
(661 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_58279| Best HMM Match : No HMM Matches (HMM E-Value=.) 85 5e-17
SB_32383| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.5
SB_7335| Best HMM Match : TSP_1 (HMM E-Value=0) 30 1.5
SB_30565| Best HMM Match : Metallothio (HMM E-Value=1.8) 30 1.5
SB_35576| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.9
SB_35194| Best HMM Match : EGF_2 (HMM E-Value=0) 30 1.9
SB_41134| Best HMM Match : EGF_CA (HMM E-Value=0) 29 2.5
SB_30577| Best HMM Match : Ldl_recept_a (HMM E-Value=2.8e-25) 29 2.5
SB_20479| Best HMM Match : Collagen (HMM E-Value=1) 29 2.5
SB_11563| Best HMM Match : SNF7 (HMM E-Value=0.28) 29 2.5
SB_42659| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.4
SB_47507| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.4
SB_16478| Best HMM Match : C2 (HMM E-Value=2.2e-13) 29 4.4
SB_58665| Best HMM Match : TSP_1 (HMM E-Value=7.5e-10) 29 4.4
SB_48688| Best HMM Match : Ldl_recept_a (HMM E-Value=7.8e-26) 29 4.4
SB_35286| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.4
SB_28756| Best HMM Match : C1_4 (HMM E-Value=0.095) 28 5.9
SB_5030| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.7
SB_41598| Best HMM Match : HLH (HMM E-Value=2.2) 28 7.7
SB_34777| Best HMM Match : VWA (HMM E-Value=0) 28 7.7
SB_30175| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.7
>SB_58279| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 744
Score = 85.0 bits (201), Expect = 5e-17
Identities = 50/96 (52%), Positives = 58/96 (60%), Gaps = 1/96 (1%)
Frame = +1
Query: 142 SALVRPLAAVPTHTQMVPAVPTQLS-AVRSFQTTSVTKDIDSAAKFXXXXXXXXXXXXXX 318
+A +RP + +VPA P + A R FQT+S +D+DSAAKF
Sbjct: 61 TAAIRPQSQALVKA-VVPASPLLGALASRGFQTSSAVQDVDSAAKFIGAGAATVGAAGSG 119
Query: 319 XXXXXXFGSLIIGYARNPSLKQQLFSYAILGFALSE 426
FGSLIIGYARNPSLKQQLFSYAILGFALSE
Sbjct: 120 AGIGTVFGSLIIGYARNPSLKQQLFSYAILGFALSE 155
>SB_32383| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1850
Score = 30.3 bits (65), Expect = 1.5
Identities = 19/77 (24%), Positives = 36/77 (46%), Gaps = 6/77 (7%)
Frame = -2
Query: 408 QNG-V*EQLLLE--GGVPGIADDEGAEDCSNTS---SGTSYSHCRCTSTNEFGSRVNVLS 247
QNG + E++L++ G + G + ++T S T + H CT ++ + L
Sbjct: 1728 QNGPIMEKILVQLPGSIAGYTNTNSGAAANSTDIPESRTCFDHDECTQYSQVQCNEDWLK 1787
Query: 246 DRCGLEGPHCRELCRDS 196
C + +CR +C D+
Sbjct: 1788 INCPKKCKYCRPVCEDT 1804
>SB_7335| Best HMM Match : TSP_1 (HMM E-Value=0)
Length = 2681
Score = 30.3 bits (65), Expect = 1.5
Identities = 19/77 (24%), Positives = 36/77 (46%), Gaps = 6/77 (7%)
Frame = -2
Query: 408 QNG-V*EQLLLE--GGVPGIADDEGAEDCSNTS---SGTSYSHCRCTSTNEFGSRVNVLS 247
QNG + E++L++ G + G + ++T S T + H CT ++ + L
Sbjct: 52 QNGPIMEKILVQLPGSIAGYTNTNSGAAANSTDIPESRTCFDHDECTQYSQVQCNEDWLK 111
Query: 246 DRCGLEGPHCRELCRDS 196
C + +CR +C D+
Sbjct: 112 INCPKKCKYCRPVCEDT 128
>SB_30565| Best HMM Match : Metallothio (HMM E-Value=1.8)
Length = 565
Score = 30.3 bits (65), Expect = 1.5
Identities = 16/36 (44%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Frame = -2
Query: 276 EFGSRVNVLSDRCGLEGPHCR-ELCRDSRYHLCMGG 172
E R NVLSD GLE CR LC + + C G
Sbjct: 76 EASQRCNVLSDAPGLETESCRCTLCDERGFSACRSG 111
>SB_35576| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1315
Score = 29.9 bits (64), Expect = 1.9
Identities = 25/84 (29%), Positives = 36/84 (42%), Gaps = 15/84 (17%)
Frame = -2
Query: 303 SHCRCTSTN---EFGSRVNVL-----SDRC--GLEGPHCRELCRDSRYHLCMGGYCCKWS 154
++C+C S+ E G ++V+ +D C + C C Y C+ G C KW
Sbjct: 1151 ANCKCLSSKFACESGECIDVVGLCDGTDDCKDASDESRCDHKCSKDEYQ-CVSGACVKWP 1209
Query: 153 HQC---RVAEDG--RPGCRGDQSG 97
C + EDG PG G Q G
Sbjct: 1210 LTCDGKKDCEDGTDEPGICGVQIG 1233
>SB_35194| Best HMM Match : EGF_2 (HMM E-Value=0)
Length = 960
Score = 29.9 bits (64), Expect = 1.9
Identities = 29/104 (27%), Positives = 43/104 (41%), Gaps = 12/104 (11%)
Frame = -2
Query: 366 PGIADDEGAEDCSNTSSGTSYSH-CRCTSTNEFGSRVNVLSDRC----------GLEGPH 220
PG ++ C + G + +H C CT+ G+R N ++ +C G GP
Sbjct: 346 PGWTGPFCSKPCPPSLWGHNCAHPCNCTN----GARCNAVTGQCACTDGCSCNAGWTGPE 401
Query: 219 CRELC-RDSRYHLCMGGYCCKWSHQCRVAEDGRPGCRGDQSGGR 91
CR+ C DS C C + +C A GR C +G R
Sbjct: 402 CRDPCGLDSWGPGCTNTCQCSRNGECDAA-SGRCACAPGFTGDR 444
>SB_41134| Best HMM Match : EGF_CA (HMM E-Value=0)
Length = 802
Score = 29.5 bits (63), Expect = 2.5
Identities = 20/80 (25%), Positives = 31/80 (38%)
Frame = -2
Query: 345 GAEDCSNTSSGTSYSHCRCTSTNEFGSRVNVLSDRCGLEGPHCRELCRDSRYHLCMGGYC 166
G D + G+ CR ++ + + C C +LCRD+ GGY
Sbjct: 278 GCRDLCINTPGSFMCQCRQGYVLANDNKTCINLNECATRKHRCEQLCRDTD-----GGYY 332
Query: 165 CKWSHQCRVAEDGRPGCRGD 106
C+ +V DG C G+
Sbjct: 333 CECHKGYQVGPDGM-SCIGN 351
>SB_30577| Best HMM Match : Ldl_recept_a (HMM E-Value=2.8e-25)
Length = 147
Score = 29.5 bits (63), Expect = 2.5
Identities = 31/123 (25%), Positives = 48/123 (39%), Gaps = 3/123 (2%)
Frame = -2
Query: 477 ESEEQQERH-HKTEQTHSLRQGETQNG--V*EQLLLEGGVPGIADDEGAEDCSNTSSGTS 307
ES Q H H + H Q + NG V ++L +G + D +C+ S+
Sbjct: 23 ESCHMQPLHAHPSHSCHG-DQFQCLNGMCVGQELRCDGDYACV-DHSDERNCACRSAEFK 80
Query: 306 YSHCRCTSTNEFGSRVNVLSDRCGLEGPHCRELCRDSRYHLCMGGYCCKWSHQCRVAEDG 127
+C ++F + + +D G + C C S H C G C WS C D
Sbjct: 81 CPDGKCVHPSKFCNGESDCTD--GSDEWSCDNSC--SSRHACADGTCVTWSLTCNGVSDC 136
Query: 126 RPG 118
+ G
Sbjct: 137 QDG 139
Score = 28.7 bits (61), Expect = 4.4
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = +3
Query: 159 TCSSTHPYTDGTCCPYTALCSAV 227
+CSS H DGTC ++ C+ V
Sbjct: 111 SCSSRHACADGTCVTWSLTCNGV 133
>SB_20479| Best HMM Match : Collagen (HMM E-Value=1)
Length = 1214
Score = 29.5 bits (63), Expect = 2.5
Identities = 16/36 (44%), Positives = 19/36 (52%)
Frame = -2
Query: 507 VVVFLKVNSLESEEQQERHHKTEQTHSLRQGETQNG 400
+V LK ESEE E H EQ H +Q +T NG
Sbjct: 208 LVPSLKKPRCESEEDDEEEHDLEQCHD-QQKDTSNG 242
>SB_11563| Best HMM Match : SNF7 (HMM E-Value=0.28)
Length = 859
Score = 29.5 bits (63), Expect = 2.5
Identities = 25/98 (25%), Positives = 44/98 (44%), Gaps = 3/98 (3%)
Frame = -2
Query: 492 KVNSLESEEQQERHHKTEQTHSLRQGETQNGV*EQLLLEGGVPGIADDEGAEDCSNTSS- 316
K++ L+ E Q H + + +L +N V + +G +EGAE SS
Sbjct: 204 KIDELDEIESQTSEHASNEMQNL---SFENNV--WTVTDGDKEQETGEEGAEPTPGESSP 258
Query: 315 --GTSYSHCRCTSTNEFGSRVNVLSDRCGLEGPHCREL 208
GT+ + +++ + N LS++C + HC EL
Sbjct: 259 GAGTAPNALPNADSSKKLAEFNELSEKCRIMRVHCLEL 296
>SB_42659| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 5834
Score = 29.1 bits (62), Expect = 3.4
Identities = 11/32 (34%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Frame = -2
Query: 237 GLEGPHCRELCRDSRYHLCMG-GYCCKWSHQC 145
G G C +LC+ +++C G G C +W+ C
Sbjct: 5392 GYWGEDCGKLCKGGIWNVCNGHGTCNRWTGDC 5423
>SB_47507| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 917
Score = 29.1 bits (62), Expect = 3.4
Identities = 16/51 (31%), Positives = 23/51 (45%), Gaps = 1/51 (1%)
Frame = -2
Query: 237 GLEGPHCRELCRDSRYHLCMGGYCCKWSHQCRVAEDGR-PGCRGDQSGGRQ 88
G + P E CR + C C +++HQC E+G P S GR+
Sbjct: 365 GRDRPTSSEACRSWNFAKCFFPGC-RYTHQCAYCENGNYPARECPSSAGRK 414
>SB_16478| Best HMM Match : C2 (HMM E-Value=2.2e-13)
Length = 186
Score = 28.7 bits (61), Expect = 4.4
Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Frame = +2
Query: 146 HWCDHLQQYPPIHRWY-LLSLHSSLQCGPSRPHRSLRTL 259
HW + + PI RW+ L H+SL P+RP+R+ + +
Sbjct: 129 HWNEAMTAKKPIARWHSLREFHNSLL--PTRPNRTSKPI 165
>SB_58665| Best HMM Match : TSP_1 (HMM E-Value=7.5e-10)
Length = 718
Score = 28.7 bits (61), Expect = 4.4
Identities = 17/53 (32%), Positives = 25/53 (47%)
Frame = +3
Query: 78 KQNAVCRQTDRPCSQVCHLLQLCTGATTCSSTHPYTDGTCCPYTALCSAVLPD 236
++ VC TD+PC + H ++ C T +T P T C T S +PD
Sbjct: 489 RRERVCSDTDKPCQGLDHEVRECQ-VTRPDTTTPTMPTTLC--TIHYSQXVPD 538
>SB_48688| Best HMM Match : Ldl_recept_a (HMM E-Value=7.8e-26)
Length = 351
Score = 28.7 bits (61), Expect = 4.4
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = +3
Query: 159 TCSSTHPYTDGTCCPYTALCSAV 227
+CSS H DGTC ++ C+ V
Sbjct: 111 SCSSRHACADGTCVTWSLTCNGV 133
Score = 28.3 bits (60), Expect = 5.9
Identities = 30/123 (24%), Positives = 48/123 (39%), Gaps = 3/123 (2%)
Frame = -2
Query: 477 ESEEQQERH-HKTEQTHSLRQGETQNG--V*EQLLLEGGVPGIADDEGAEDCSNTSSGTS 307
ES Q H H + H Q + NG V +++ +G + D +C+ S+
Sbjct: 23 ESCHMQPLHAHPSHSCHG-DQFQCLNGMCVGQEVRCDGDYACV-DHSDERNCACRSAEFK 80
Query: 306 YSHCRCTSTNEFGSRVNVLSDRCGLEGPHCRELCRDSRYHLCMGGYCCKWSHQCRVAEDG 127
+C ++F + + +D G + C C S H C G C WS C D
Sbjct: 81 CPDGKCVHPSKFCNGESDCTD--GSDEWSCDNSC--SSRHACADGTCVTWSLTCNGVSDC 136
Query: 126 RPG 118
+ G
Sbjct: 137 QDG 139
>SB_35286| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 564
Score = 28.7 bits (61), Expect = 4.4
Identities = 18/60 (30%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
Frame = -2
Query: 285 STNEFGSRVNVLS-DRCGLEGPHCRELCRDSRYHLCMGGYCCKWSHQCRVAEDGRPGCRG 109
ST E +R+ ++S D+C + CR+ C+ S + MG C + + + ++A P C G
Sbjct: 8 STQEKLTRIAIVSTDKC--KPKRCRQECKKSCPVVRMGKLCIEVTPETKLAAISEPLCIG 65
>SB_28756| Best HMM Match : C1_4 (HMM E-Value=0.095)
Length = 201
Score = 28.3 bits (60), Expect = 5.9
Identities = 11/25 (44%), Positives = 13/25 (52%)
Frame = -2
Query: 216 RELCRDSRYHLCMGGYCCKWSHQCR 142
R CR HLC+G C+W Q R
Sbjct: 173 RNGCRKCDVHLCVGDCFCEWHQQRR 197
>SB_5030| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 296
Score = 27.9 bits (59), Expect = 7.7
Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 7/34 (20%)
Frame = +3
Query: 300 GSSWFRSWYWNSLR--LPHH-----RLCQEPLPQ 380
G +WF SW W + LPH+ + C E LP+
Sbjct: 261 GENWFLSWIWPKITSPLPHNGTDYTQACNEELPK 294
>SB_41598| Best HMM Match : HLH (HMM E-Value=2.2)
Length = 519
Score = 27.9 bits (59), Expect = 7.7
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = -2
Query: 294 RCTSTNEFGSRVNVLSDRCGLEGPHCRELCRDSRY 190
R T T +FG +VN+ S LEG R+ D+ +
Sbjct: 16 RATFTKDFGCQVNICSASASLEGEIQRQRNTDTNF 50
>SB_34777| Best HMM Match : VWA (HMM E-Value=0)
Length = 1268
Score = 27.9 bits (59), Expect = 7.7
Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 4/51 (7%)
Frame = -2
Query: 477 ESEEQQERHHKTEQTHSLR----QGETQNGV*EQLLLEGGVPGIADDEGAE 337
+ + QER +TEQTH QG+ Q +Q ++G G + D+G E
Sbjct: 636 DQNQTQERQGQTEQTHGPDPGEVQGQEQGQGQDQSHVQGQEEGHSQDQGQE 686
>SB_30175| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 617
Score = 27.9 bits (59), Expect = 7.7
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = -2
Query: 495 LKVNSLESEEQQERHHKTEQTHSLRQGETQN 403
LK E E+QQ +HHK E+ Q E Q+
Sbjct: 426 LKHQKQEEEQQQLQHHKQEEEQLKHQQEQQH 456
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,730,805
Number of Sequences: 59808
Number of extensions: 492878
Number of successful extensions: 1782
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 1564
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1776
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1693527500
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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