Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc19f20
         (634 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_30354| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.0  
SB_45157| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.8  
SB_452| Best HMM Match : RVT_1 (HMM E-Value=9.9e-25)                   29   3.1  
SB_29730| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.5  
SB_14243| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.5  
SB_6738| Best HMM Match : DUF1328 (HMM E-Value=2.4)                    28   7.2  
SB_49425| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.6  

>SB_30354| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 669

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 21/77 (27%), Positives = 29/77 (37%)
 Frame = -3

Query: 473 SILTAGAYLPVHSTCGITSSSSHACNSTA*GSLLFIISWITPSLVMSTVCGCRYSGSPCL 294
           SI+     LP  S  G+         +    S  F+   I    + ST C  R S   C 
Sbjct: 107 SIINESVNLPRRSMSGLLLLFVEPYTAGDRDSEKFVYPDIKSVRLQSTACQTRSSARDCA 166

Query: 293 TTLSGAGVYGIDPDSLY 243
             +SG    G+ P+S Y
Sbjct: 167 PRISGGRRKGVSPESFY 183


>SB_45157| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2870

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 17/54 (31%), Positives = 30/54 (55%)
 Frame = +1

Query: 79  IGEFKFGEDTFTLRYVLEQGNLQVKFVAKDIASSLKYVNCKQAVIVNVDKKYKT 240
           I +F+FG        ++   + ++KF AK+IA + K++   QAV ++  K Y T
Sbjct: 116 IPDFRFGCSDLYFVCLMTPKSTEIKFDAKEIADA-KWMETSQAVYLDKGKYYYT 168


>SB_452| Best HMM Match : RVT_1 (HMM E-Value=9.9e-25)
          Length = 1486

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 21/77 (27%), Positives = 28/77 (36%)
 Frame = -3

Query: 473  SILTAGAYLPVHSTCGITSSSSHACNSTA*GSLLFIISWITPSLVMSTVCGCRYSGSPCL 294
            SI+     LP  S   +         + A  S  F+   I    V ST C  R S   C 
Sbjct: 969  SIINESVNLPRRSMSSLLLLFVEPYTAGARDSEKFVYPDIKSVRVQSTACQTRSSARGCA 1028

Query: 293  TTLSGAGVYGIDPDSLY 243
              +SG    G+ P+  Y
Sbjct: 1029 PRISGGRRKGVSPELFY 1045


>SB_29730| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4275

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 16/54 (29%), Positives = 26/54 (48%)
 Frame = +1

Query: 91   KFGEDTFTLRYVLEQGNLQVKFVAKDIASSLKYVNCKQAVIVNVDKKYKTTYSE 252
            K GED F +  +L++G   V  V  D+ +S     CK+ ++      Y+  Y E
Sbjct: 2045 KIGEDAFQVFSILQKGKGVVVDVPGDVFNSFVESGCKREILERCFDMYR-AYKE 2097


>SB_14243| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1507

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 14/44 (31%), Positives = 27/44 (61%), Gaps = 2/44 (4%)
 Frame = +1

Query: 484 GVIEELNKKLAFASESLAEANEKIIHFANALVTANA--GLVQAN 609
           GV+EEL  KL+   E L ++N+++   +  + + NA  G+++ N
Sbjct: 799 GVVEELENKLSKLQEKLEQSNQQLAAKSKRIESLNAEMGVLREN 842


>SB_6738| Best HMM Match : DUF1328 (HMM E-Value=2.4)
          Length = 391

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 17/64 (26%), Positives = 31/64 (48%)
 Frame = +1

Query: 304 DPLYLQPHTVLITKEGVIQLIMKSKLPYAVELQAWLLEEVIPQVLCTGKYAPAVKMDTNY 483
           D + +     L+T+   I L ++  + +AV    WL  ++   +L  GKY P+     N+
Sbjct: 115 DAMSIDTAASLLTRSQWISLNIQIVVYFAV----WLTFQLFDAILIPGKYMPSGSYQVNW 170

Query: 484 GVIE 495
            +IE
Sbjct: 171 LIIE 174


>SB_49425| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 429

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = -3

Query: 344 LVMSTVCGCRYSGSPCLTTLS 282
           +VM TVC CRY  S C++  S
Sbjct: 246 VVMCTVCACRYVHSVCVSLRS 266


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,508,846
Number of Sequences: 59808
Number of extensions: 366937
Number of successful extensions: 965
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 884
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 965
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1584657875
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)