Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc19f20
         (634 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U50135-2|AAM98043.1| 1584|Caenorhabditis elegans Uncoordinated p...    29   3.7  
U50135-1|AAM98044.2| 1628|Caenorhabditis elegans Uncoordinated p...    29   3.7  
M58582-1|AAA03517.1| 1584|Caenorhabditis elegans kinesin-related...    29   3.7  
AF100306-10|AAC68926.1|  798|Caenorhabditis elegans Hypothetical...    29   3.7  
Z81075-6|CAB03049.1|  564|Caenorhabditis elegans Hypothetical pr...    28   4.8  
Z81070-13|CAB03009.1|  564|Caenorhabditis elegans Hypothetical p...    28   4.8  

>U50135-2|AAM98043.1| 1584|Caenorhabditis elegans Uncoordinated
           protein 104, isoforma protein.
          Length = 1584

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 15/61 (24%), Positives = 30/61 (49%)
 Frame = +1

Query: 145 QVKFVAKDIASSLKYVNCKQAVIVNVDKKYKTTYSESGSIPYTPAPDNVVKQGDPLYLQP 324
           Q   V  D+  +  +V    A+ V + KK +  ++      Y+P P +++  G+ L L+P
Sbjct: 696 QFTSVRDDLWGNAIFVKEANAISVELKKKVQFQFALLTDTMYSPLPPDLLPPGEDLTLRP 755

Query: 325 H 327
           +
Sbjct: 756 Y 756


>U50135-1|AAM98044.2| 1628|Caenorhabditis elegans Uncoordinated
           protein 104, isoformb protein.
          Length = 1628

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 15/61 (24%), Positives = 30/61 (49%)
 Frame = +1

Query: 145 QVKFVAKDIASSLKYVNCKQAVIVNVDKKYKTTYSESGSIPYTPAPDNVVKQGDPLYLQP 324
           Q   V  D+  +  +V    A+ V + KK +  ++      Y+P P +++  G+ L L+P
Sbjct: 696 QFTSVRDDLWGNAIFVKEANAISVELKKKVQFQFALLTDTMYSPLPPDLLPPGEDLTLRP 755

Query: 325 H 327
           +
Sbjct: 756 Y 756


>M58582-1|AAA03517.1| 1584|Caenorhabditis elegans kinesin-related
           protein protein.
          Length = 1584

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 15/61 (24%), Positives = 30/61 (49%)
 Frame = +1

Query: 145 QVKFVAKDIASSLKYVNCKQAVIVNVDKKYKTTYSESGSIPYTPAPDNVVKQGDPLYLQP 324
           Q   V  D+  +  +V    A+ V + KK +  ++      Y+P P +++  G+ L L+P
Sbjct: 696 QFTSVRDDLWGNAIFVKEANAISVELKKKVQFQFALLTDTMYSPLPPDLLPPGEDLTLRP 755

Query: 325 H 327
           +
Sbjct: 756 Y 756


>AF100306-10|AAC68926.1|  798|Caenorhabditis elegans Hypothetical
           protein T24C4.7 protein.
          Length = 798

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 17/44 (38%), Positives = 21/44 (47%)
 Frame = -2

Query: 531 TFASKRQLFI*LFNHTIICVHLDGRRVLARAQHLRNHLLQQPRL 400
           TF + R      FN+ ++C   D R V A    LR HL QQ  L
Sbjct: 101 TFVAHRYKCHGSFNNNVMCPLGDCREVFASLYTLRRHLSQQHEL 144


>Z81075-6|CAB03049.1|  564|Caenorhabditis elegans Hypothetical
           protein F26E4.11 protein.
          Length = 564

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 3/53 (5%)
 Frame = -3

Query: 287 LSGAGVYGIDPDSLYVVLYFLSTLTITAC--LQFTYF-KLLAMSLATNLTCRF 138
           +S + V+  +PDS+    Y+L  +T   C  +Q   F +LLA S   NLT  F
Sbjct: 238 ISSSRVFSFNPDSVRHFNYWLELITNFVCELIQMLSFAQLLAFSPGLNLTSIF 290


>Z81070-13|CAB03009.1|  564|Caenorhabditis elegans Hypothetical
           protein F26E4.11 protein.
          Length = 564

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 3/53 (5%)
 Frame = -3

Query: 287 LSGAGVYGIDPDSLYVVLYFLSTLTITAC--LQFTYF-KLLAMSLATNLTCRF 138
           +S + V+  +PDS+    Y+L  +T   C  +Q   F +LLA S   NLT  F
Sbjct: 238 ISSSRVFSFNPDSVRHFNYWLELITNFVCELIQMLSFAQLLAFSPGLNLTSIF 290


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,535,478
Number of Sequences: 27780
Number of extensions: 268053
Number of successful extensions: 794
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 772
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 794
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1395683256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)