Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc19f19
(531 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_54531| Best HMM Match : Ribosomal_S19e (HMM E-Value=5e-30) 99 1e-21
SB_8022| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.0
SB_44946| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.4
SB_9024| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.4
SB_9755| Best HMM Match : Sushi (HMM E-Value=0) 29 3.1
SB_38543| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.1
SB_36204| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.4
SB_50399| Best HMM Match : EPTP (HMM E-Value=0.041) 27 7.2
SB_29339| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.5
>SB_54531| Best HMM Match : Ribosomal_S19e (HMM E-Value=5e-30)
Length = 92
Score = 99 bits (238), Expect = 1e-21
Identities = 52/110 (47%), Positives = 67/110 (60%)
Frame = +3
Query: 105 TGKVKVPEHMDLVKTARFKELAPYDPDWFYVRCAAILRHIYIRSPVGVKTVTKIFGGRKR 284
+G +K+P+ +DLVKT +FKELAPYDPDW+Y+R GRK
Sbjct: 2 SGNLKIPDWVDLVKTGKFKELAPYDPDWYYIRA-----------------------GRKN 38
Query: 285 NGVTPSHFCRSSGSIARKALQSLEALKLVEKVQDGGRILTTQGRRDLDRI 434
G PSHF S S+AR L+ LE +KLVEK GGR +T+QG+RD+DRI
Sbjct: 39 RGSAPSHFEVGSASVARSVLKGLEQIKLVEKASTGGRNITSQGQRDMDRI 88
>SB_8022| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 386
Score = 30.3 bits (65), Expect = 1.0
Identities = 30/115 (26%), Positives = 46/115 (40%), Gaps = 1/115 (0%)
Frame = +3
Query: 45 TVKDVEQDKIVKTVAAHLKKTGKVKVPEHMD-LVKTARFKELAPYDPDWFYVRCAAILRH 221
TV V K KT ++VP ++ L T R E+ + W V+C
Sbjct: 221 TVNKVTGRKYTKTFVIMSGSNRPMRVPHSLEPLTLTNRVAEVT-FCRSWNAVKCTKYCAL 279
Query: 222 IYIRSPVGVKTVTKIFGGRKRNGVTPSHFCRSSGSIARKALQSLEALKLVEKVQD 386
IY+ S + + V K+ GRK T + S + + S E L L +V +
Sbjct: 280 IYLHSRLDTQPVNKVI-GRK---YTKTFVIMSGPNRPMRVPHSSEPLTLTNRVAE 330
>SB_44946| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 128
Score = 29.9 bits (64), Expect = 1.4
Identities = 19/62 (30%), Positives = 29/62 (46%)
Frame = +3
Query: 183 DWFYVRCAAILRHIYIRSPVGVKTVTKIFGGRKRNGVTPSHFCRSSGSIARKALQSLEAL 362
D +YVR A + I + G + +I R+R VTPS S G + L L+ +
Sbjct: 57 DQWYVRDACVSPSENISTNYGSPKLPRIVETRQRGDVTPSPLVLSRGISRERLLTKLDRM 116
Query: 363 KL 368
+L
Sbjct: 117 QL 118
>SB_9024| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 455
Score = 29.1 bits (62), Expect = 2.4
Identities = 17/57 (29%), Positives = 31/57 (54%), Gaps = 3/57 (5%)
Frame = +2
Query: 233 LTCWSQDC---HQDLRWAQT*WSYTFTFLQVIRQYCTQGFAIVGGIEAC*ESSGRWS 394
++C ++DC + L +T S T TF ++ C +GF ++G +S+G+WS
Sbjct: 262 VSCKARDCGPLNTPLNGTKT-GSLT-TFPNTVKFMCDEGFNLIGSRNRTCQSNGKWS 316
Score = 27.5 bits (58), Expect = 7.2
Identities = 12/32 (37%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Frame = +2
Query: 302 TFLQVIRQYCTQGFAIVGG-IEAC*ESSGRWS 394
TF + C +GF ++G + +C +SSG+WS
Sbjct: 112 TFPNKVTFSCDEGFILIGSPLRSC-QSSGKWS 142
>SB_9755| Best HMM Match : Sushi (HMM E-Value=0)
Length = 1351
Score = 28.7 bits (61), Expect = 3.1
Identities = 10/31 (32%), Positives = 18/31 (58%)
Frame = +2
Query: 302 TFLQVIRQYCTQGFAIVGGIEAC*ESSGRWS 394
TF ++ C +GF ++G +S+G+WS
Sbjct: 21 TFPNTVKFMCDEGFNLIGSRNRTCQSNGKWS 51
>SB_38543| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 346
Score = 28.3 bits (60), Expect = 4.1
Identities = 15/40 (37%), Positives = 21/40 (52%)
Frame = +2
Query: 56 C*TRQDC*NCRCSLKKNGQSQGT*AHGSCKDSSLQRAGSV 175
C QDC + RC +KNG + T A G CK S + ++
Sbjct: 301 CNCMQDCSSSRCFWRKNG-IECTPACGQCKGSDCTNSPAI 339
>SB_36204| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 113
Score = 27.9 bits (59), Expect = 5.4
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = +1
Query: 196 CVVLPSFVIFTFAHLLESRLSPRSSVG 276
C LP V+F H++ L P SSVG
Sbjct: 26 CGTLPDLVMFRTGHIMRRALIPCSSVG 52
>SB_50399| Best HMM Match : EPTP (HMM E-Value=0.041)
Length = 204
Score = 27.5 bits (58), Expect = 7.2
Identities = 10/18 (55%), Positives = 15/18 (83%)
Frame = +1
Query: 466 RLSNKSLYFNFMLIKI*N 519
R+ NKS++FNF ++KI N
Sbjct: 48 RVENKSIFFNFQVLKIAN 65
>SB_29339| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1048
Score = 27.1 bits (57), Expect = 9.5
Identities = 11/36 (30%), Positives = 20/36 (55%)
Frame = +2
Query: 302 TFLQVIRQYCTQGFAIVGGIEAC*ESSGRWSHSHHT 409
T+ I C +G+A++G +++G WS S+ T
Sbjct: 913 TYSSTINITCDEGYALIGPESRVCQANGTWSGSNVT 948
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,923,916
Number of Sequences: 59808
Number of extensions: 322491
Number of successful extensions: 753
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 692
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 753
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1191330434
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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