Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc19f18
(606 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual 36 0.003
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 32 0.075
SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyc... 31 0.17
SPAC3H8.05c |||conserved fungal protein|Schizosaccharomyces pomb... 30 0.30
SPBC29A10.10c |||tRNA-splicing endonuclease positive effector |S... 27 2.1
SPBC36B7.08c |||nucleosome assembly protein |Schizosaccharomyces... 27 2.8
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual 27 2.8
SPCC132.01c ||SPCC1322.17c|DUF814 family protein|Schizosaccharom... 27 2.8
SPAC31F12.01 |zds1|SPAC637.14, mug88|zds family protein Zds1|Sch... 27 2.8
SPCC970.08 |||inositol polyphosphate kinase |Schizosaccharomyces... 26 3.7
SPBC16E9.08 |mcp4|mug101|sequence orphan|Schizosaccharomyces pom... 26 3.7
SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subuni... 26 4.9
SPAC18B11.11 ||SPAC1F5.01|GTPase activating protein |Schizosacch... 26 4.9
SPAC1F8.01 |ght3||hexose transporter Ght3 |Schizosaccharomyces p... 25 6.5
SPAC25B8.08 |||conserved fungal family|Schizosaccharomyces pombe... 25 6.5
SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi... 25 6.5
SPAC2F7.07c |||histone deacetylase complex subunit Rco1 |Schizos... 25 8.6
SPAC6F6.17 |rif1|tap1, tap11, SPAPJ736.01|telomere length regula... 25 8.6
SPBC577.15c |||NASP family histone binding protein|Schizosacchar... 25 8.6
>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1236
Score = 36.3 bits (80), Expect = 0.003
Identities = 44/167 (26%), Positives = 72/167 (43%)
Frame = -1
Query: 600 SNSCVLRSSHSLNGSSTKMLRKTSYNCLPNVYTCSYSFMLVSLLTYITKKSTSIFKHL*Y 421
S+S SS + S T + S + +P+ ++ S S +L S + + S SI
Sbjct: 542 SSSIPTSSSSDFSSSITTISSGISSSSIPSTFS-SVSSILSSSTSSPSSTSLSISSSSTS 600
Query: 420 ATYFDLSFKPSTVYSSSFASTTFRLLLSSPLVAGASVCSVLIISDSIFKVSKGLMAFIKS 241
+T+ S + SSS +S++ L +P + + S IIS S +S + S
Sbjct: 601 STFSSASTSSPSSISSSISSSSTILSSPTPSTSSLMISSSSIISGSSSILSSSISTIPIS 660
Query: 240 SFCSGVVNGKSIEKLSSSVHSSGTLFRRNVTFLGSFSSGIKSALILL 100
S S + I S+ V SS +L + S SS I S+ L+
Sbjct: 661 SSLS-TYSSSVIPSSSTLVSSSSSLIVSSSPVASSSSSPIPSSSSLV 706
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 31.9 bits (69), Expect = 0.075
Identities = 47/183 (25%), Positives = 73/183 (39%)
Frame = -1
Query: 600 SNSCVLRSSHSLNGSSTKMLRKTSYNCLPNVYTCSYSFMLVSLLTYITKKSTSIFKHL*Y 421
S+S +S +++ SS+ TS + + + S S S L+ + S+S F
Sbjct: 279 SSSSPTSTSSTISSSSSSSSSPTSTSSTISSSSSSSS-SFSSTLSSSSMSSSSSFSSSPT 337
Query: 420 ATYFDLSFKPSTVYSSSFASTTFRLLLSSPLVAGASVCSVLIISDSIFKVSKGLMAFIKS 241
++ +S S+ SSSF+STT SS + S S S S S
Sbjct: 338 SSSSTISSSSSSPSSSSFSSTTSSSKSSSSFSSTVSSSSSTSSSTLTSSSSSSSRPASSS 397
Query: 240 SFCSGVVNGKSIEKLSSSVHSSGTLFRRNVTFLGSFSSGIKSALILLELSDIMVVACKFN 61
S S + + KS SS + F N T S SS S+ L LS ++ +
Sbjct: 398 SHSSSLSSHKSSSSSKSSSAPVSSAFYHNST--SSRSSSHSSSHSLSSLSSKPILTASSS 455
Query: 60 KLI 52
L+
Sbjct: 456 SLL 458
Score = 29.5 bits (63), Expect = 0.40
Identities = 45/168 (26%), Positives = 65/168 (38%), Gaps = 7/168 (4%)
Frame = -1
Query: 594 SCVLRSSHSLNGSSTKMLRKTSYNCLPNVYTCSYSFMLVSLLTYITKKSTSIFKHL*YAT 415
S S S SS + TS + + S S +S + ++ S+ T
Sbjct: 172 SSTFSSLSSSTSSSQPSVSSTSSSTFSSAAPTSTSSSYLSSSSVVSSSSSPSSSSSSTLT 231
Query: 414 YFDLSFK--PSTVYSSSFASTTFRLLLSSPLVAGASVCSVLIISDSIFKVS----KGLMA 253
LS PST SSS S++ SS + +S S +I S S S ++
Sbjct: 232 SSSLSTSSIPSTSSSSSSTSSSLSSSSSSSTASSSSSSSSIISSSSSSSSSPTSTSSTIS 291
Query: 252 FIKSSFCSGVVNGKSIEKLSSSVHS-SGTLFRRNVTFLGSFSSGIKSA 112
SS S +I SSS S S TL +++ SFSS S+
Sbjct: 292 SSSSSSSSPTSTSSTISSSSSSSSSFSSTLSSSSMSSSSSFSSSPTSS 339
>SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1085
Score = 30.7 bits (66), Expect = 0.17
Identities = 21/98 (21%), Positives = 46/98 (46%)
Frame = +2
Query: 56 NLLNLQATTIMSLNSNKIKADLIPDENDPKNVTLRLNSVPEECTDDDNFSIDLPLTTPEQ 235
NL N ++ S+K + +I D PK +++ LN+VP + +DD +L + +
Sbjct: 333 NLANTESVNASDEGSDKSQKGIISDS--PKLLSIPLNNVPSKSLNDDITQDELNSSNADV 390
Query: 236 KDDFMNAIKPFETLNIESDIIKTEQTDAPATSGDDNNN 349
++ + E N+++ T ++ T D +++
Sbjct: 391 DEEVIETTS-LEEKNVDNQEFVTSISNGNQTLEDTSHS 427
>SPAC3H8.05c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1073
Score = 29.9 bits (64), Expect = 0.30
Identities = 19/54 (35%), Positives = 25/54 (46%)
Frame = +2
Query: 149 VTLRLNSVPEECTDDDNFSIDLPLTTPEQKDDFMNAIKPFETLNIESDIIKTEQ 310
VTL L VP+ + S DLPLT D+F + L I ++TEQ
Sbjct: 640 VTLTLEGVPDFKVYSNPISTDLPLTLQSPSDEFSTIYAWSDYLYIVGIDMETEQ 693
>SPBC29A10.10c |||tRNA-splicing endonuclease positive effector
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1944
Score = 27.1 bits (57), Expect = 2.1
Identities = 11/25 (44%), Positives = 13/25 (52%)
Frame = +2
Query: 530 EVLRSIFVDEPFKLWLERNTHEFDN 604
EV+ IF +K W E NT F N
Sbjct: 318 EVIDKIFNGNAYKRWTEENTSNFSN 342
>SPBC36B7.08c |||nucleosome assembly protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 244
Score = 26.6 bits (56), Expect = 2.8
Identities = 11/37 (29%), Positives = 20/37 (54%)
Frame = +2
Query: 128 DENDPKNVTLRLNSVPEECTDDDNFSIDLPLTTPEQK 238
+E +P++V + L P E DDN ++ + E+K
Sbjct: 85 NEKEPRDVRISLTFQPNEYLQDDNLTLVKEVRIKEEK 121
>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 4717
Score = 26.6 bits (56), Expect = 2.8
Identities = 14/37 (37%), Positives = 19/37 (51%)
Frame = +2
Query: 287 SDIIKTEQTDAPATSGDDNNNRKVVDANEDEYTVDGL 397
SDI +T + P G N + KV + +EDE D L
Sbjct: 4375 SDIKQTGEDTLPTEFGSINQSEKVFELSEDEDIEDEL 4411
>SPCC132.01c ||SPCC1322.17c|DUF814 family protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1021
Score = 26.6 bits (56), Expect = 2.8
Identities = 13/62 (20%), Positives = 27/62 (43%)
Frame = +2
Query: 95 NSNKIKADLIPDENDPKNVTLRLNSVPEECTDDDNFSIDLPLTTPEQKDDFMNAIKPFET 274
N + + ++ K + + +P ++ F+ID P+Q+D +NA+ F
Sbjct: 885 NEKGLSTEQRDEKKHAKVESFQRQEMPRSLFEEIFFAIDSLTPNPQQQDTVINAVPTFAP 944
Query: 275 LN 280
N
Sbjct: 945 YN 946
>SPAC31F12.01 |zds1|SPAC637.14, mug88|zds family protein
Zds1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 938
Score = 26.6 bits (56), Expect = 2.8
Identities = 21/107 (19%), Positives = 44/107 (41%), Gaps = 6/107 (5%)
Frame = +2
Query: 92 LNSNKIKADL-IPDENDPKNVTLRLNSVPEECTDDDNFSIDLPLTTPEQKDDFMNAIKPF 268
++S+ + L I ++DPK+ + EC + D + + P + + +
Sbjct: 1 MSSSSVSNTLSIETKSDPKDPAFVASQESTECNEHDTTQLSGSSSEPLENNSSLTRSTDD 60
Query: 269 ETLNIESDIIKTEQ-----TDAPATSGDDNNNRKVVDANEDEYTVDG 394
++ I S ++ + +D T ++NNN D E+ T G
Sbjct: 61 PSVEIRSKLVSPDNEANLLSDQNITISNENNNEN--DTTEEAETSSG 105
>SPCC970.08 |||inositol polyphosphate kinase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 967
Score = 26.2 bits (55), Expect = 3.7
Identities = 17/61 (27%), Positives = 26/61 (42%)
Frame = +2
Query: 188 DDDNFSIDLPLTTPEQKDDFMNAIKPFETLNIESDIIKTEQTDAPATSGDDNNNRKVVDA 367
+++N + PL E D F + P L++ E PA+ +NNN DA
Sbjct: 641 NEENSELPPPLEPAEIGDPFRSVNDPRRVLSLPHMASADEDHRIPASDNQNNNNN---DA 697
Query: 368 N 370
N
Sbjct: 698 N 698
>SPBC16E9.08 |mcp4|mug101|sequence orphan|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 355
Score = 26.2 bits (55), Expect = 3.7
Identities = 13/42 (30%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Frame = +2
Query: 17 KINLCNIQFQ-SLINLLNLQATTIMSLNSNKIKADLIPDEND 139
K+ L +QFQ S+ NL+N Q ++ ++ +P+EN+
Sbjct: 314 KLELEVVQFQMSIANLINTQVEVTNTIEELGLRCRPLPNENE 355
>SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subunit a
Pol2 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 2199
Score = 25.8 bits (54), Expect = 4.9
Identities = 30/143 (20%), Positives = 57/143 (39%), Gaps = 11/143 (7%)
Frame = +2
Query: 155 LRLNSVPEECTDDDNFSIDLPLTTPEQKDDFMNAIKPFETLNIESDIIKTEQTDAPATSG 334
L L +PE+ + SI + P + I+P E L +E K P G
Sbjct: 1367 LFLLEIPEKSYLTEKVSISMIFAHPSVSGIYETRIEPIERLILEMGSRKRFNNSVPGALG 1426
Query: 335 D----DNNNRKVVDANEDEYT-VDGLKLKSKYVAYYKCLKILVDFLVMYVSKETNMKEYE 499
++ D ++++ + +DG+++ Y ++ V L M K+ Y+
Sbjct: 1427 KGFEFGFESKMFTDPSDNDVSYLDGVEMNYLYAFHFSISNRFVFSLFMPHLKKVEAIIYD 1486
Query: 500 QV------YTLGRQLYEVLRSIF 550
++ + ++YE LRS F
Sbjct: 1487 KLPGSDMSFPSISKIYEELRSKF 1509
>SPAC18B11.11 ||SPAC1F5.01|GTPase activating protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1294
Score = 25.8 bits (54), Expect = 4.9
Identities = 12/35 (34%), Positives = 23/35 (65%), Gaps = 1/35 (2%)
Frame = +2
Query: 203 SIDLPLTTPEQKDDFMNAIKPFETL-NIESDIIKT 304
S+D+P+ D ++A+K F+TL +++ +II T
Sbjct: 1174 SVDVPVIIKISLDSHLDALKMFDTLFHVKLEIITT 1208
>SPAC1F8.01 |ght3||hexose transporter Ght3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 555
Score = 25.4 bits (53), Expect = 6.5
Identities = 9/30 (30%), Positives = 17/30 (56%)
Frame = +2
Query: 425 YKCLKILVDFLVMYVSKETNMKEYEQVYTL 514
Y C+ + F++ +++KET E+V L
Sbjct: 437 YACINLFSSFMIFFLAKETKGLTLEEVNDL 466
>SPAC25B8.08 |||conserved fungal family|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 590
Score = 25.4 bits (53), Expect = 6.5
Identities = 13/27 (48%), Positives = 15/27 (55%)
Frame = +2
Query: 269 ETLNIESDIIKTEQTDAPATSGDDNNN 349
ET N+ES K D A S +DNNN
Sbjct: 110 ETHNLESPAWKHADYDGVAASVNDNNN 136
>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 374
Score = 25.4 bits (53), Expect = 6.5
Identities = 23/74 (31%), Positives = 31/74 (41%)
Frame = -1
Query: 390 STVYSSSFASTTFRLLLSSPLVAGASVCSVLIISDSIFKVSKGLMAFIKSSFCSGVVNGK 211
+TV SSS +STT SSP + + + S S S + SS S +
Sbjct: 125 TTVSSSSVSSTTSSSSSSSPSSSSTTTTTSPSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 184
Query: 210 SIEKLSSSVHSSGT 169
S SSS SS +
Sbjct: 185 SSSSSSSSSSSSSS 198
>SPAC2F7.07c |||histone deacetylase complex subunit Rco1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 607
Score = 25.0 bits (52), Expect = 8.6
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +2
Query: 332 GDDNNNRKVVDANEDEYTVDGLKLKSK 412
G N V+D NEDE +V ++L+ K
Sbjct: 480 GFKNKGNIVIDENEDEPSVQTIQLQGK 506
>SPAC6F6.17 |rif1|tap1, tap11, SPAPJ736.01|telomere length regulator
protein Rif1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1400
Score = 25.0 bits (52), Expect = 8.6
Identities = 9/17 (52%), Positives = 14/17 (82%)
Frame = -1
Query: 249 IKSSFCSGVVNGKSIEK 199
++SSFCSG+ N + +EK
Sbjct: 97 LQSSFCSGIENLQHVEK 113
>SPBC577.15c |||NASP family histone binding
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 396
Score = 25.0 bits (52), Expect = 8.6
Identities = 14/44 (31%), Positives = 23/44 (52%)
Frame = -1
Query: 273 VSKGLMAFIKSSFCSGVVNGKSIEKLSSSVHSSGTLFRRNVTFL 142
V++G MA+ + ++ V S S+H S +L RNV +L
Sbjct: 36 VTQGNMAYAQKNYEEAVDKYGQALMQSESIHGSESLENRNVLWL 79
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,393,873
Number of Sequences: 5004
Number of extensions: 50682
Number of successful extensions: 231
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 218
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 229
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 266270664
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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