Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc19f18
(606 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_8392| Best HMM Match : Helicase_C (HMM E-Value=0.057) 30 1.3
SB_43421| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.3
SB_59202| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.2
SB_59217| Best HMM Match : TRAUB (HMM E-Value=0.25) 28 5.1
SB_52222| Best HMM Match : SAPS (HMM E-Value=2.1e-37) 28 5.1
SB_1398| Best HMM Match : fn3 (HMM E-Value=0.0034) 28 5.1
SB_48110| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.1
SB_41870| Best HMM Match : DUF963 (HMM E-Value=0.22) 28 5.1
SB_22650| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.1
SB_16373| Best HMM Match : L51_S25_CI-B8 (HMM E-Value=3.6) 28 5.1
SB_5050| Best HMM Match : SSF (HMM E-Value=0.001) 28 5.1
SB_46249| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.7
SB_53810| Best HMM Match : DUF1542 (HMM E-Value=3.9) 28 6.7
SB_50149| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.7
SB_10519| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.7
SB_6444| Best HMM Match : CRAM_rpt (HMM E-Value=3e-11) 28 6.7
SB_54030| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.9
SB_50183| Best HMM Match : zf-C2H2 (HMM E-Value=0) 27 8.9
SB_25727| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.9
SB_14526| Best HMM Match : Drf_FH1 (HMM E-Value=0.16) 27 8.9
>SB_8392| Best HMM Match : Helicase_C (HMM E-Value=0.057)
Length = 276
Score = 30.3 bits (65), Expect = 1.3
Identities = 31/139 (22%), Positives = 54/139 (38%), Gaps = 4/139 (2%)
Frame = +2
Query: 98 SNKIKADLIPDENDPKNVTLRLNSVPEECTDDDNFSIDLPLTTPEQKDDFMNAIKP---F 268
+N K +P + K + S+ EEC DDD + + T E D K
Sbjct: 139 NNSAKTTAVPSDPKQKTLFSCFESLIEECDDDDLIASESDFVTLETSADVKATAKSAMVL 198
Query: 269 ETLNIESDIIKTEQTDAPAT-SGDDNNNRKVVDANEDEYTVDGLKLKSKYVAYYKCLKIL 445
+ N ES + Q D A D+ + D D ++ + K V + ++
Sbjct: 199 SSTNTESRSEEPSQLDQAAQFDWFDDMTGLLSDEETDFVKIESSENKGTRVNAGERIRKA 258
Query: 446 VDFLVMYVSKETNMKEYEQ 502
D ++ +KE + K Y++
Sbjct: 259 EDMDII-TAKEPSAKRYKR 276
>SB_43421| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 715
Score = 30.3 bits (65), Expect = 1.3
Identities = 22/100 (22%), Positives = 45/100 (45%), Gaps = 3/100 (3%)
Frame = +2
Query: 92 LNSNKIKADLIPDENDPKNVTLRLNSVPEECTDDDNFSIDLPLTTPEQKDDFMNAIKPFE 271
+++N + D I D+ND + + N V ++ DD++ D DD + + +
Sbjct: 610 IDANDVDDDDI-DDNDVDDDDIDDNDVDDDDIDDNDVDDDDIDANDVDDDDIDDNVVDDD 668
Query: 272 TLN---IESDIIKTEQTDAPATSGDDNNNRKVVDANEDEY 382
++ ++ D+I D +D +N + D N D+Y
Sbjct: 669 NIDDNVVDDDVIDAINVDDDGIDANDVDNDDIDDNNIDDY 708
>SB_59202| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1530
Score = 29.5 bits (63), Expect = 2.2
Identities = 20/84 (23%), Positives = 38/84 (45%), Gaps = 2/84 (2%)
Frame = +2
Query: 95 NSNKIKADLIPDENDPKNVTLRLNSVP-EECTDDDNFSIDL-PLTTPEQKDDFMNAIKPF 268
+SN L+P + + + L+ VP + D+F + L P + DDF+ ++ P
Sbjct: 498 SSNDFFVSLVPARSVSSSDEVFLSLVPARSVSSSDDFIVSLVPARSVSSSDDFIVSLVPA 557
Query: 269 ETLNIESDIIKTEQTDAPATSGDD 340
+++ D I + +S DD
Sbjct: 558 HSVSSSDDFIVSLVPAHSVSSSDD 581
>SB_59217| Best HMM Match : TRAUB (HMM E-Value=0.25)
Length = 626
Score = 28.3 bits (60), Expect = 5.1
Identities = 17/68 (25%), Positives = 29/68 (42%)
Frame = +2
Query: 128 DENDPKNVTLRLNSVPEECTDDDNFSIDLPLTTPEQKDDFMNAIKPFETLNIESDIIKTE 307
D DPK++ ++L P TDD + + PE D P E+ + + +
Sbjct: 326 DMTDPKSIGIKLQRNPSPITDDSSKTATYS-RLPEASSDNSRPESPAESSKSPTSPLSLQ 384
Query: 308 QTDAPATS 331
++A TS
Sbjct: 385 GSEAALTS 392
>SB_52222| Best HMM Match : SAPS (HMM E-Value=2.1e-37)
Length = 1063
Score = 28.3 bits (60), Expect = 5.1
Identities = 16/65 (24%), Positives = 29/65 (44%)
Frame = +2
Query: 137 DPKNVTLRLNSVPEECTDDDNFSIDLPLTTPEQKDDFMNAIKPFETLNIESDIIKTEQTD 316
DP +V L N ++ +DDD+ D +P +K + T + S ++ T + +
Sbjct: 941 DPASVPLASNESDDDISDDDDTPDDKSSGSPCKKQPVSPSTPNTTTSDTSSSVLNTSRGE 1000
Query: 317 APATS 331
A S
Sbjct: 1001 VAANS 1005
>SB_1398| Best HMM Match : fn3 (HMM E-Value=0.0034)
Length = 2245
Score = 28.3 bits (60), Expect = 5.1
Identities = 12/36 (33%), Positives = 23/36 (63%)
Frame = -1
Query: 291 SDSIFKVSKGLMAFIKSSFCSGVVNGKSIEKLSSSV 184
S ++++VS G++ +GV +GK++E +SSV
Sbjct: 89 SRTVYRVSSGVLGGSSGPIWAGVSSGKTVEGTASSV 124
>SB_48110| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 429
Score = 28.3 bits (60), Expect = 5.1
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = -2
Query: 398 LSRPPCTRPRSHRPLFDYYYHRR 330
L + PCTR R+ + + D YHRR
Sbjct: 38 LCQSPCTRGRNRKRVSDTIYHRR 60
>SB_41870| Best HMM Match : DUF963 (HMM E-Value=0.22)
Length = 233
Score = 28.3 bits (60), Expect = 5.1
Identities = 38/146 (26%), Positives = 66/146 (45%), Gaps = 7/146 (4%)
Frame = -1
Query: 588 VLRSSHSLNGSSTKMLRKTSYNCLP---NVYTCSYSFMLVSLLTYITKKSTSIFKHL*YA 418
+L +S S+ +S +L TS + L +V S S + S T +S +A
Sbjct: 74 ILATSRSVLATSRSVLA-TSRSVLATSRSVLATSRSVLATSRYILATSRSVLATGRSSFA 132
Query: 417 TY-FDLSFKPSTVYSSSFASTTFRLLLSSPLVAGASVCSVLIISDSIFKVSKGLMAFIKS 241
T + L+ S + +S T R +L++ A+ SVL S I S+ ++A +S
Sbjct: 133 TSRYILATSRSVLATSRSVLATSRSVLATSRSVLATSRSVLATSRYILATSRSVLATGRS 192
Query: 240 SFCSG---VVNGKSIEKLSSSVHSSG 172
SF + + +S+ S SV ++G
Sbjct: 193 SFATSRYILATSRSVLATSRSVLATG 218
>SB_22650| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 531
Score = 28.3 bits (60), Expect = 5.1
Identities = 18/64 (28%), Positives = 32/64 (50%), Gaps = 2/64 (3%)
Frame = +2
Query: 188 DDDNFSIDLPLTTPEQKDDFMNAIKPFETLNIESDIIKTEQTDAPATSGDD--NNNRKVV 361
D+D++S+D+ P Q + A P+ +I S + + +D T DD ++V
Sbjct: 96 DEDDYSLDILRKVPLQDNLVTKAFGPYPESHISSAVDSEDDSD---TDDDDLEIGRSQIV 152
Query: 362 DANE 373
DA+E
Sbjct: 153 DADE 156
>SB_16373| Best HMM Match : L51_S25_CI-B8 (HMM E-Value=3.6)
Length = 537
Score = 28.3 bits (60), Expect = 5.1
Identities = 9/18 (50%), Positives = 15/18 (83%)
Frame = -2
Query: 374 PRSHRPLFDYYYHRRLLP 321
PR +RP+F+ Y++ RL+P
Sbjct: 80 PRGYRPIFECYWNGRLIP 97
>SB_5050| Best HMM Match : SSF (HMM E-Value=0.001)
Length = 364
Score = 28.3 bits (60), Expect = 5.1
Identities = 13/42 (30%), Positives = 22/42 (52%)
Frame = +2
Query: 428 KCLKILVDFLVMYVSKETNMKEYEQVYTLGRQLYEVLRSIFV 553
K + + LV Y+S T + ++YT G Q Y ++ S F+
Sbjct: 49 KVWPVAISLLVSYLSAITLLGVPSEIYTYGAQYYVLIISYFI 90
>SB_46249| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 834
Score = 27.9 bits (59), Expect = 6.7
Identities = 24/88 (27%), Positives = 42/88 (47%)
Frame = -1
Query: 399 FKPSTVYSSSFASTTFRLLLSSPLVAGASVCSVLIISDSIFKVSKGLMAFIKSSFCSGVV 220
+K S++Y SS + L SSPL +S+C S S++K S + S + S +
Sbjct: 722 YKSSSLYKSSSLYKSSALYKSSPLYKCSSLCK----SSSLYKSSP--LHKSSSLYKSSYL 775
Query: 219 NGKSIEKLSSSVHSSGTLFRRNVTFLGS 136
S SS ++ S +L++ + + S
Sbjct: 776 YKSSYLYKSSFLYKSSSLYKSSFVYKSS 803
>SB_53810| Best HMM Match : DUF1542 (HMM E-Value=3.9)
Length = 560
Score = 27.9 bits (59), Expect = 6.7
Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Frame = +2
Query: 242 DFMNAIKPFETLNIESDIIKTEQTDAPAT-SGDDNNNRKVVDANEDEYTVDGLKLKS 409
D +N + NI SD + DA +GDD+N DAN+D+ ++ L+S
Sbjct: 425 DDINGDDDADDENINSDDADDDHDDADDNINGDDDNIDGDNDANDDDDNINDCALRS 481
>SB_50149| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 656
Score = 27.9 bits (59), Expect = 6.7
Identities = 20/69 (28%), Positives = 35/69 (50%), Gaps = 1/69 (1%)
Frame = +2
Query: 329 SGDDNNN-RKVVDANEDEYTVDGLKLKSKYVAYYKCLKILVDFLVMYVSKETNMKEYEQV 505
SGD N VDA ++E D ++ Y + +K++VDF M + +MK+++
Sbjct: 215 SGDTNETVSNGVDAGDEEDESDKSEISQVYEIATR-MKMMVDFQDMENAGPAHMKKFKIK 273
Query: 506 YTLGRQLYE 532
T+G + E
Sbjct: 274 ATVGPYMTE 282
>SB_10519| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 873
Score = 27.9 bits (59), Expect = 6.7
Identities = 14/37 (37%), Positives = 22/37 (59%)
Frame = -1
Query: 309 CSVLIISDSIFKVSKGLMAFIKSSFCSGVVNGKSIEK 199
C + + DS+ +V K L F+K S CS +N +S+ K
Sbjct: 564 CVINELPDSVNRVMKYLFKFLKHSICS--LNARSLVK 598
>SB_6444| Best HMM Match : CRAM_rpt (HMM E-Value=3e-11)
Length = 2297
Score = 27.9 bits (59), Expect = 6.7
Identities = 12/50 (24%), Positives = 25/50 (50%)
Frame = +2
Query: 254 AIKPFETLNIESDIIKTEQTDAPATSGDDNNNRKVVDANEDEYTVDGLKL 403
++ P + +ES +++T D G+D +RK+V + V+ K+
Sbjct: 1479 SVDPEQIQVVESSVVETLDEDFDKMFGEDPGDRKIVKTKQTVMKVESTKV 1528
>SB_54030| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 460
Score = 27.5 bits (58), Expect = 8.9
Identities = 21/83 (25%), Positives = 35/83 (42%)
Frame = +2
Query: 128 DENDPKNVTLRLNSVPEECTDDDNFSIDLPLTTPEQKDDFMNAIKPFETLNIESDIIKTE 307
DEND ++ N + E DD++ + D + +D MN +N ++D+
Sbjct: 165 DENDENDMNDE-NDMNNE-NDDNDMNDDNDMNDDNDMND-MNDDNDMNDMNDDNDMNDMN 221
Query: 308 QTDAPATSGDDNNNRKVVDANED 376
D DDN+ D N+D
Sbjct: 222 DMDDDNDMNDDNDMNDDNDMNDD 244
>SB_50183| Best HMM Match : zf-C2H2 (HMM E-Value=0)
Length = 717
Score = 27.5 bits (58), Expect = 8.9
Identities = 11/36 (30%), Positives = 21/36 (58%)
Frame = +2
Query: 131 ENDPKNVTLRLNSVPEECTDDDNFSIDLPLTTPEQK 238
++D K + R+++VPE D S D+P+ P+ +
Sbjct: 93 KHDRKGIARRVSNVPESDPASDPPSPDIPVVVPDHR 128
>SB_25727| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1758
Score = 27.5 bits (58), Expect = 8.9
Identities = 20/77 (25%), Positives = 33/77 (42%)
Frame = +2
Query: 317 APATSGDDNNNRKVVDANEDEYTVDGLKLKSKYVAYYKCLKILVDFLVMYVSKETNMKEY 496
+PAT + K + DE+ VD KLK + + V ++ K +M Y
Sbjct: 321 SPATKRRTTDRIKALLKEVDEFKVDNTKLKPREAKALAQARFTVKYM---FGKPYDMNYY 377
Query: 497 EQVYTLGRQLYEVLRSI 547
Y LG L+ +++ I
Sbjct: 378 AGDYMLGPNLWCMMQPI 394
>SB_14526| Best HMM Match : Drf_FH1 (HMM E-Value=0.16)
Length = 517
Score = 27.5 bits (58), Expect = 8.9
Identities = 17/57 (29%), Positives = 27/57 (47%)
Frame = +2
Query: 74 ATTIMSLNSNKIKADLIPDENDPKNVTLRLNSVPEECTDDDNFSIDLPLTTPEQKDD 244
A T S ++N+ AD P +DP + LNS E+ + D + +P P+ D
Sbjct: 415 AETAPSEDANRPSADS-PQPSDPDDTAHALNSTVEDSSSDLGQNPQVPDYVPDSSPD 470
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,570,668
Number of Sequences: 59808
Number of extensions: 368275
Number of successful extensions: 1185
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 1092
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1180
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1475788250
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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