Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc19f18
(606 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z77662-13|CAD54139.2| 257|Caenorhabditis elegans Hypothetical p... 34 0.091
Z77662-12|CAB01202.2| 338|Caenorhabditis elegans Hypothetical p... 34 0.091
Z81564-5|CAB04569.1| 656|Caenorhabditis elegans Hypothetical pr... 31 0.48
Z81483-3|CAB03961.1| 152|Caenorhabditis elegans Hypothetical pr... 31 0.64
Z81460-3|CAB03829.1| 1228|Caenorhabditis elegans Hypothetical pr... 30 1.1
U70849-7|AAF99925.2| 332|Caenorhabditis elegans Collagen protei... 29 2.6
Z81062-3|CAB02948.2| 325|Caenorhabditis elegans Hypothetical pr... 29 3.4
U50067-5|AAY86219.1| 306|Caenorhabditis elegans Hypothetical pr... 28 5.9
AL132864-1|CAB63392.1| 613|Caenorhabditis elegans Hypothetical ... 28 5.9
AL032632-13|CAA21587.2| 507|Caenorhabditis elegans Hypothetical... 28 5.9
AC084197-23|AAM44389.1| 610|Caenorhabditis elegans Hypothetical... 28 5.9
Z75952-5|CAB00093.2| 149|Caenorhabditis elegans Hypothetical pr... 27 7.9
Z75712-6|CAB00048.1| 1188|Caenorhabditis elegans Hypothetical pr... 27 7.9
Z75712-5|CAB00045.1| 1186|Caenorhabditis elegans Hypothetical pr... 27 7.9
Z49886-6|CAI79131.1| 149|Caenorhabditis elegans Hypothetical pr... 27 7.9
Z49886-5|CAA90055.1| 152|Caenorhabditis elegans Hypothetical pr... 27 7.9
U64834-2|AAB04823.2| 1145|Caenorhabditis elegans Hypothetical pr... 27 7.9
U23520-6|AAC46553.1| 287|Caenorhabditis elegans Collagen protei... 27 7.9
AF013950-1|AAC47747.1| 1186|Caenorhabditis elegans APR-1 protein. 27 7.9
>Z77662-13|CAD54139.2| 257|Caenorhabditis elegans Hypothetical
protein F47B8.9b protein.
Length = 257
Score = 33.9 bits (74), Expect = 0.091
Identities = 19/51 (37%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Frame = -1
Query: 567 LNGSSTKMLRKTS-YNCLPNVYTCSYSFMLVSLLTYITKKSTSIFKHL*YA 418
LNG+S ++ T+ Y NV C L+S+ T+I K +I KH+ YA
Sbjct: 6 LNGASPEVATTTAIYAWWNNVAACLILIPLISISTFILLKGKTILKHMKYA 56
>Z77662-12|CAB01202.2| 338|Caenorhabditis elegans Hypothetical
protein F47B8.9a protein.
Length = 338
Score = 33.9 bits (74), Expect = 0.091
Identities = 19/51 (37%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Frame = -1
Query: 567 LNGSSTKMLRKTS-YNCLPNVYTCSYSFMLVSLLTYITKKSTSIFKHL*YA 418
LNG+S ++ T+ Y NV C L+S+ T+I K +I KH+ YA
Sbjct: 6 LNGASPEVATTTAIYAWWNNVAACLILIPLISISTFILLKGKTILKHMKYA 56
>Z81564-5|CAB04569.1| 656|Caenorhabditis elegans Hypothetical
protein K05C4.5 protein.
Length = 656
Score = 31.5 bits (68), Expect = 0.48
Identities = 22/95 (23%), Positives = 50/95 (52%), Gaps = 2/95 (2%)
Frame = +2
Query: 56 NLLNLQATTIMSLNSNKIKADLIPDENDPKNVTLRLNSVPEECTDDDNFSIDLPLTTPEQ 235
++L++++ T++S +KA+ EN+ + + + EE + + + + +
Sbjct: 558 SILDVESGTVVSAQDGPLKANKKQRENEDTRLLVNGMRLREEVEQNGD---GMSPSKRTR 614
Query: 236 KDDFMNAIKPFETLNIESDIIKTEQT--DAPATSG 334
++ F N I PF+++N S I++ E T + P T+G
Sbjct: 615 RNSFKNEIPPFQSMN--SRIVQLEVTGDEIPKTAG 647
>Z81483-3|CAB03961.1| 152|Caenorhabditis elegans Hypothetical
protein C43D7.5 protein.
Length = 152
Score = 31.1 bits (67), Expect = 0.64
Identities = 19/82 (23%), Positives = 40/82 (48%), Gaps = 1/82 (1%)
Frame = +2
Query: 146 NVTLRLNSVPEECTDDDNFSIDLPLTTPEQKDDFMNAIKPFETLNIESDIIKTEQTDAPA 325
NV ++++ + C + + +S T ++KD+F N +T+N + E+ D
Sbjct: 7 NVDTKVDNRKDNCDNTNTYS-----HTVDRKDNFDNTTTNTKTVNRNDNCNNQEEGDVNM 61
Query: 326 TSGDDN-NNRKVVDANEDEYTV 388
+DN NNR+ ++ Y++
Sbjct: 62 YRRNDNCNNREATNSRSANYSI 83
>Z81460-3|CAB03829.1| 1228|Caenorhabditis elegans Hypothetical
protein C04A11.3 protein.
Length = 1228
Score = 30.3 bits (65), Expect = 1.1
Identities = 16/54 (29%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Frame = +2
Query: 260 KPFETLNIESDIIKTEQTDAPAT-SGDDNNNRKVVDANEDEYTVDGLKLKSKYV 418
KP T + +D+ KT AP G + NR+ + Y +DG+++ S V
Sbjct: 767 KPVPTPSTSTDVQKTNSNVAPRPLGGRKDGNRQTITKKTRTYMIDGVQVTSTTV 820
>U70849-7|AAF99925.2| 332|Caenorhabditis elegans Collagen protein
111 protein.
Length = 332
Score = 29.1 bits (62), Expect = 2.6
Identities = 14/43 (32%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Frame = +2
Query: 281 IESDIIKTEQTDAPATSGDDNNNR-KVVDANEDEYTVDGLKLK 406
+ES +I E + G D + R KVV+ +++E T D K +
Sbjct: 288 VESSVISQEVPETGYGDGGDKSKREKVVETHQEEQTYDSFKFE 330
>Z81062-3|CAB02948.2| 325|Caenorhabditis elegans Hypothetical
protein F15A4.4 protein.
Length = 325
Score = 28.7 bits (61), Expect = 3.4
Identities = 39/157 (24%), Positives = 69/157 (43%)
Frame = -1
Query: 606 LLSNSCVLRSSHSLNGSSTKMLRKTSYNCLPNVYTCSYSFMLVSLLTYITKKSTSIFKHL 427
LLS + S N S K ++ S + ++ F+L++L I S S++K +
Sbjct: 164 LLSRMYIFPSYGGFNASYVKYVQWASLSMFQSI------FLLIALCFTIICSSVSLYKLI 217
Query: 426 *YATYFDLSFKPSTVYSSSFASTTFRLLLSSPLVAGASVCSVLIISDSIFKVSKGLMAFI 247
S + S + S F S F ++ S L+ C V + + ++ + + AF
Sbjct: 218 ILPDRIK-SAEKSLCFVSLFYSIAFLVVAVSQLIF--VFCEVCL-KNRLYLLFQ-FFAFD 272
Query: 246 KSSFCSGVVNGKSIEKLSSSVHSSGTLFRRNVTFLGS 136
+ S V+ S +LS+ + SGT +RR + GS
Sbjct: 273 FLTVGSAVIIMLSSPQLSNFLGFSGTFYRRKASPPGS 309
>U50067-5|AAY86219.1| 306|Caenorhabditis elegans Hypothetical
protein C18F3.4 protein.
Length = 306
Score = 27.9 bits (59), Expect = 5.9
Identities = 24/80 (30%), Positives = 38/80 (47%), Gaps = 1/80 (1%)
Frame = +2
Query: 110 KADLIPDENDPKNVTLRLNSVPEECTDDDNFSIDLPLTTPEQKDDFMNAIKPFETL-NIE 286
+ +L D ND + T NSV E DD++ S + L+ P ++ + P +L I
Sbjct: 54 QCNLRDDPNDDQPTTSS-NSVKESINDDESNSENNKLSPPRRQSN------PHSSLPAIS 106
Query: 287 SDIIKTEQTDAPATSGDDNN 346
S +K E TD+ S N+
Sbjct: 107 SSTVKNEPTDSWTPSALSND 126
>AL132864-1|CAB63392.1| 613|Caenorhabditis elegans Hypothetical
protein Y53H1A.1 protein.
Length = 613
Score = 27.9 bits (59), Expect = 5.9
Identities = 16/55 (29%), Positives = 26/55 (47%)
Frame = +2
Query: 98 SNKIKADLIPDENDPKNVTLRLNSVPEECTDDDNFSIDLPLTTPEQKDDFMNAIK 262
+ K K D DE P+N + + E +DDN S D E+++ F+ +K
Sbjct: 312 AGKSKFDSSSDEESPENEKFPVGNGKSEYQEDDNDSED---DLEERREQFIRCVK 363
>AL032632-13|CAA21587.2| 507|Caenorhabditis elegans Hypothetical
protein Y11D7A.12a protein.
Length = 507
Score = 27.9 bits (59), Expect = 5.9
Identities = 17/53 (32%), Positives = 24/53 (45%)
Frame = +2
Query: 224 TPEQKDDFMNAIKPFETLNIESDIIKTEQTDAPATSGDDNNNRKVVDANEDEY 382
TPE+ M+ P +T I II TE D+P+ RK D +E+
Sbjct: 326 TPERYTQHMSPNLPLQTATIAPLIIPTENYDSPSYR-QPAIKRKATDLTNEEH 377
>AC084197-23|AAM44389.1| 610|Caenorhabditis elegans Hypothetical
protein Y73B6BL.33 protein.
Length = 610
Score = 27.9 bits (59), Expect = 5.9
Identities = 11/24 (45%), Positives = 13/24 (54%)
Frame = +2
Query: 125 PDENDPKNVTLRLNSVPEECTDDD 196
PD N N +RL VP C +DD
Sbjct: 149 PDSNGEVNHVIRLRGVPWSCKEDD 172
>Z75952-5|CAB00093.2| 149|Caenorhabditis elegans Hypothetical
protein F29D10.2 protein.
Length = 149
Score = 27.5 bits (58), Expect = 7.9
Identities = 16/46 (34%), Positives = 18/46 (39%), Gaps = 1/46 (2%)
Frame = -2
Query: 605 CCQIRACCVPATV*TARRQKCCAKPRTTVCL-TCTLARILSCWSLC 471
CC+ R CC R + CC RT C CT R C C
Sbjct: 68 CCRPRCCCC------CRPKCCCTCCRTCCCTRCCTCCRPCCCGCGC 107
>Z75712-6|CAB00048.1| 1188|Caenorhabditis elegans Hypothetical protein
K04G2.8b protein.
Length = 1188
Score = 27.5 bits (58), Expect = 7.9
Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 5/54 (9%)
Frame = +2
Query: 140 PKNVTLRLNSVPEEC-----TDDDNFSIDLPLTTPEQKDDFMNAIKPFETLNIE 286
PK L+ PEE T DD ++ P+ EQ+ +MNA+K + NIE
Sbjct: 1084 PKPTLLKDKHYPEEDSIENQTRDDTIYVNAPVVEAEQERIYMNALK--QQKNIE 1135
>Z75712-5|CAB00045.1| 1186|Caenorhabditis elegans Hypothetical protein
K04G2.8a protein.
Length = 1186
Score = 27.5 bits (58), Expect = 7.9
Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 5/54 (9%)
Frame = +2
Query: 140 PKNVTLRLNSVPEEC-----TDDDNFSIDLPLTTPEQKDDFMNAIKPFETLNIE 286
PK L+ PEE T DD ++ P+ EQ+ +MNA+K + NIE
Sbjct: 1082 PKPTLLKDKHYPEEDSIENQTRDDTIYVNAPVVEAEQERIYMNALK--QQKNIE 1133
>Z49886-6|CAI79131.1| 149|Caenorhabditis elegans Hypothetical
protein C06A1.7 protein.
Length = 149
Score = 27.5 bits (58), Expect = 7.9
Identities = 16/46 (34%), Positives = 18/46 (39%), Gaps = 1/46 (2%)
Frame = -2
Query: 605 CCQIRACCVPATV*TARRQKCCAKPRTTVCL-TCTLARILSCWSLC 471
CC+ R CC R + CC RT C CT R C C
Sbjct: 70 CCRPRCCCC------CRPKCCCTCCRTCCCTRCCTCCRPCCCGCGC 109
>Z49886-5|CAA90055.1| 152|Caenorhabditis elegans Hypothetical
protein C06A1.6 protein.
Length = 152
Score = 27.5 bits (58), Expect = 7.9
Identities = 16/46 (34%), Positives = 18/46 (39%), Gaps = 1/46 (2%)
Frame = -2
Query: 605 CCQIRACCVPATV*TARRQKCCAKPRTTVCL-TCTLARILSCWSLC 471
CC+ R CC R + CC RT C CT R C C
Sbjct: 73 CCRPRCCCC------CRPKCCCTCCRTCCCTRCCTCCRPCCCGCGC 112
>U64834-2|AAB04823.2| 1145|Caenorhabditis elegans Hypothetical
protein F54D11.2 protein.
Length = 1145
Score = 27.5 bits (58), Expect = 7.9
Identities = 14/54 (25%), Positives = 25/54 (46%)
Frame = -1
Query: 591 CVLRSSHSLNGSSTKMLRKTSYNCLPNVYTCSYSFMLVSLLTYITKKSTSIFKH 430
C + S N + K L + NC + T ++ FM+ +L ++ SI K+
Sbjct: 642 CQWHTVTSANAQALKNLYTIANNCTEDAITWTHQFMIENLEVHMLASYLSILKY 695
>U23520-6|AAC46553.1| 287|Caenorhabditis elegans Collagen protein
175 protein.
Length = 287
Score = 27.5 bits (58), Expect = 7.9
Identities = 16/36 (44%), Positives = 24/36 (66%), Gaps = 3/36 (8%)
Frame = -1
Query: 357 TFRLLLS---SPLVAGASVCSVLIISDSIFKVSKGL 259
TF L +S S +V AS+CSVL+I + I K+S+ +
Sbjct: 2 TFALTVSCATSAVVITASLCSVLVIMNDINKLSEDI 37
>AF013950-1|AAC47747.1| 1186|Caenorhabditis elegans APR-1 protein.
Length = 1186
Score = 27.5 bits (58), Expect = 7.9
Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 5/54 (9%)
Frame = +2
Query: 140 PKNVTLRLNSVPEEC-----TDDDNFSIDLPLTTPEQKDDFMNAIKPFETLNIE 286
PK L+ PEE T DD ++ P+ EQ+ +MNA+K + NIE
Sbjct: 1082 PKPTLLKDKHYPEEDSIENQTRDDTIYVNAPVVEAEQERIYMNALK--QQKNIE 1133
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,241,715
Number of Sequences: 27780
Number of extensions: 283351
Number of successful extensions: 1008
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 945
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 994
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1300523034
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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