Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc19f18
(606 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g32230.2 68414.m03965 WWE domain-containing protein / ceo pro... 36 0.021
At1g32230.1 68414.m03964 WWE domain-containing protein / ceo pro... 36 0.021
At1g20970.1 68414.m02625 adhesin-related contains TIGRFAM TIGR01... 32 0.26
At2g33010.1 68415.m04045 ubiquitin-associated (UBA)/TS-N domain-... 32 0.34
At3g42100.1 68416.m04322 AT hook motif-containing protein-relate... 31 0.78
At4g26630.1 68417.m03837 expressed protein 29 2.4
At2g45160.1 68415.m05622 scarecrow transcription factor family p... 29 3.2
At1g28440.1 68414.m03496 leucine-rich repeat transmembrane prote... 29 3.2
At5g58830.1 68418.m07372 subtilase family protein contains simil... 28 5.5
At5g52280.1 68418.m06488 protein transport protein-related low s... 28 5.5
At5g03000.1 68418.m00245 kelch repeat-containing F-box family pr... 28 5.5
At2g26470.1 68415.m03176 expressed protein contains PF02586: Unc... 28 5.5
At1g63120.1 68414.m07133 rhomboid family protein contains PFAM d... 28 5.5
At5g30495.2 68418.m03660 expressed protein 27 7.3
At5g30495.1 68418.m03659 expressed protein 27 7.3
At3g29710.1 68416.m03745 hypothetical protein contains Pfam prof... 27 7.3
At3g13280.1 68416.m01672 expressed protein contains Pfam profile... 27 7.3
At2g04030.2 68415.m00372 heat shock protein, putative strong sim... 27 7.3
At2g04030.1 68415.m00371 heat shock protein, putative strong sim... 27 7.3
At1g54770.1 68414.m06245 expressed protein 27 7.3
At1g18950.1 68414.m02358 aminoacyl-tRNA synthetase family contai... 27 7.3
At5g61330.1 68418.m07696 rRNA processing protein-related contain... 27 9.6
At5g15810.1 68418.m01850 N2,N2-dimethylguanosine tRNA methyltran... 27 9.6
At3g22220.1 68416.m02803 hAT dimerisation domain-containing prot... 27 9.6
At2g45220.1 68415.m05630 pectinesterase family protein contains ... 27 9.6
At1g77680.1 68414.m09044 ribonuclease II family protein weak sim... 27 9.6
>At1g32230.2 68414.m03965 WWE domain-containing protein / ceo
protein, putative (CEO) contains Pfam domain, PF02825:
WWE domain; identical to cDNA for ceo protein (ceo gene)
GI:11044956
Length = 588
Score = 35.9 bits (79), Expect = 0.021
Identities = 26/92 (28%), Positives = 43/92 (46%), Gaps = 12/92 (13%)
Frame = +2
Query: 125 PDENDPKNVTLRLN------SVP----EECTDD--DNFSIDLPLTTPEQKDDFMNAIKPF 268
P +N P ++ LRL P EEC+D+ DN D+PL + + A +
Sbjct: 183 PKQNAPHDIKLRLEIDVNGGETPRLNLEECSDESGDNMMDDVPLAQRSSNEHYDEATEDS 242
Query: 269 ETLNIESDIIKTEQTDAPATSGDDNNNRKVVD 364
+ +E+ + K ++TDA SG +V+D
Sbjct: 243 CSRKLEAAVSKWDETDAIVVSGAKLTGSEVLD 274
>At1g32230.1 68414.m03964 WWE domain-containing protein / ceo
protein, putative (CEO) contains Pfam domain, PF02825:
WWE domain; identical to cDNA for ceo protein (ceo gene)
GI:11044956
Length = 589
Score = 35.9 bits (79), Expect = 0.021
Identities = 26/92 (28%), Positives = 43/92 (46%), Gaps = 12/92 (13%)
Frame = +2
Query: 125 PDENDPKNVTLRLN------SVP----EECTDD--DNFSIDLPLTTPEQKDDFMNAIKPF 268
P +N P ++ LRL P EEC+D+ DN D+PL + + A +
Sbjct: 183 PKQNAPHDIKLRLEIDVNGGETPRLNLEECSDESGDNMMDDVPLAQRSSNEHYDEATEDS 242
Query: 269 ETLNIESDIIKTEQTDAPATSGDDNNNRKVVD 364
+ +E+ + K ++TDA SG +V+D
Sbjct: 243 CSRKLEAAVSKWDETDAIVVSGAKLTGSEVLD 274
>At1g20970.1 68414.m02625 adhesin-related contains TIGRFAM
TIGR01612: reticulocyte binding protein; contains
TIGRFAM TIGR00864: polycystin cation channel protein;
similar to fimbriae-associated protein Fap1
[Streptococcus parasanguinis] (GI:3929312)
Length = 1498
Score = 32.3 bits (70), Expect = 0.26
Identities = 22/78 (28%), Positives = 41/78 (52%), Gaps = 4/78 (5%)
Frame = +2
Query: 188 DDDNFSIDLPLTTPEQKDDFMNA--IKPFETLNIESDIIKTE--QTDAPATSGDDNNNRK 355
+D + S D DDF+ + +KP + N+E D+ + E + DAP+ + DD
Sbjct: 52 NDTDGSYDFITENDTVGDDFVESDYVKPVDDANVEKDLKEGENVKVDAPSIADDD----- 106
Query: 356 VVDANEDEYTVDGLKLKS 409
V+ ++D T++ +L+S
Sbjct: 107 VLGVSQDSQTLEKSELES 124
>At2g33010.1 68415.m04045 ubiquitin-associated (UBA)/TS-N
domain-containing protein contains Pfam profile PF00627:
UBA/TS-N domain
Length = 649
Score = 31.9 bits (69), Expect = 0.34
Identities = 24/70 (34%), Positives = 34/70 (48%), Gaps = 1/70 (1%)
Frame = -1
Query: 333 PLVAGASVCSVLIISDSIFKVSKGLMAFIKSSFCSGVVNGKSIEKLSSSV-HSSGTLFRR 157
P+++ +S VLI S S +S GL+ F+K F N I+ S V GTL +
Sbjct: 258 PIMSSSSQVQVLIFSFSALYLSSGLLCFLKIVFTKKGTNSMLIDAHRSFVFDDEGTLEKT 317
Query: 156 NVTFLGSFSS 127
+ GS SS
Sbjct: 318 RIQ--GSSSS 325
>At3g42100.1 68416.m04322 AT hook motif-containing protein-related
very low similarity to SP|Q9UUA2 DNA repair and
recombination protein pif1, mitochondrial precursor
{Schizosaccharomyces pombe}; weak hit to Pfam profile
PF02178: AT hook motif
Length = 1752
Score = 30.7 bits (66), Expect = 0.78
Identities = 23/76 (30%), Positives = 38/76 (50%)
Frame = +2
Query: 209 DLPLTTPEQKDDFMNAIKPFETLNIESDIIKTEQTDAPATSGDDNNNRKVVDANEDEYTV 388
DL LT E ++ + I+ N + + + + P+ G DN+NR VVD E Y +
Sbjct: 1201 DLKLTLAEIRNYTLQEIEKIMLRN-GATLKEIQDFPQPSREGIDNSNRLVVD--ELRYNI 1257
Query: 389 DGLKLKSKYVAYYKCL 436
D LK K+ +++ L
Sbjct: 1258 DS-NLKEKHDEWFQML 1272
>At4g26630.1 68417.m03837 expressed protein
Length = 763
Score = 29.1 bits (62), Expect = 2.4
Identities = 21/52 (40%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
Frame = +2
Query: 230 EQKDDFMNAIKPFETLNIESDIIKTEQTDAPATSGDDNNNRKVV--DANEDE 379
E++D N K E E D K E D S D+N+N KV DA EDE
Sbjct: 216 EKEDKEENKTKEVEAAKAEVDESKVE--DEKEGSEDENDNEKVESKDAKEDE 265
>At2g45160.1 68415.m05622 scarecrow transcription factor family
protein
Length = 640
Score = 28.7 bits (61), Expect = 3.2
Identities = 16/50 (32%), Positives = 25/50 (50%)
Frame = +2
Query: 302 TEQTDAPATSGDDNNNRKVVDANEDEYTVDGLKLKSKYVAYYKCLKILVD 451
T T+ T+GDDNNN K D+ +DG+ S L++++D
Sbjct: 85 TTVTNTTVTAGDDNNNNKCSQMGLDD--LDGVLSASSPGQEQSILRLIMD 132
>At1g28440.1 68414.m03496 leucine-rich repeat transmembrane protein
kinase, putative similar to receptor kinase GI:4105699
from [Arabidopsis thaliana]
Length = 996
Score = 28.7 bits (61), Expect = 3.2
Identities = 28/86 (32%), Positives = 39/86 (45%), Gaps = 4/86 (4%)
Frame = -1
Query: 336 SPLVAGASVCSVLIISDSIFKVSK----GLMAFIKSSFCSGVVNGKSIEKLSSSVHSSGT 169
S + GAS S+LI+S++ F S G + + SG S+ S+ GT
Sbjct: 437 SKSIGGASNLSLLILSNNEFTGSLPEEIGSLDNLNQLSASGNKFSGSLPDSLMSLGELGT 496
Query: 168 LFRRNVTFLGSFSSGIKSALILLELS 91
L F G +SGIKS L EL+
Sbjct: 497 LDLHGNQFSGELTSGIKSWKKLNELN 522
>At5g58830.1 68418.m07372 subtilase family protein contains
similarity to prepro-cucumisin GI:807698 from [Cucumis
melo]
Length = 671
Score = 27.9 bits (59), Expect = 5.5
Identities = 15/33 (45%), Positives = 20/33 (60%)
Frame = -1
Query: 201 KLSSSVHSSGTLFRRNVTFLGSFSSGIKSALIL 103
KLS S S F+R VT LG+ +S KS ++L
Sbjct: 574 KLSESNSSFTVTFKRTVTNLGTANSTYKSKIVL 606
>At5g52280.1 68418.m06488 protein transport protein-related low
similarity to SP|P25386 Intracellular protein transport
protein USO1 {Saccharomyces cerevisiae}
Length = 853
Score = 27.9 bits (59), Expect = 5.5
Identities = 31/160 (19%), Positives = 76/160 (47%), Gaps = 5/160 (3%)
Frame = +2
Query: 44 QSLINLLNLQATTIMSLNSNKIKADLIPDENDPKNVTLRLNSVPEECTDDDNFSIDLPLT 223
+ L +L + I SLNS +A + + + ++++ ++ D D + +D
Sbjct: 387 RDLNEMLEQKNNEISSLNSLLEEAKKLEEHKGMDSGNNEIDTLKQQIEDLD-WELDSYKK 445
Query: 224 TPEQKDDFMNAI-KPFETL---NIESDIIKTEQTDAPATSGDDNNNRKVVDANEDEYTVD 391
E+++ ++ + + +E+L N ++ K EQ + + +++ ++D + + +
Sbjct: 446 KNEEQEILLDELTQEYESLKEENYKNVSSKLEQQECSNAEDEYLDSKDIIDELKSQIEIL 505
Query: 392 GLKLKSKYVAYYKCLKILVDFLVMYVSK-ETNMKEYEQVY 508
KLK + + Y +CL I V+ L V + + +++ Q Y
Sbjct: 506 EGKLKQQSLEYSECL-ITVNELESQVKELKKELEDQAQAY 544
>At5g03000.1 68418.m00245 kelch repeat-containing F-box family
protein similar to SKP1 interacting partner 6
[Arabidopsis thaliana] GI:10716957; contains Pfam
profiles PF01344: Kelch motif, PF00646: F-box domain
Length = 354
Score = 27.9 bits (59), Expect = 5.5
Identities = 17/55 (30%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
Frame = +2
Query: 20 INLCNIQFQSLINLLNLQAT-TIMSLNSNKIKADLIPDENDPKNVTLRLNSVPEE 181
++L N +FQSLI +L+AT + + + N + L ++N+P L +P+E
Sbjct: 63 LSLVNKEFQSLIASPDLEATRSRIGVTENHLYVCLESNKNNPNPRWFTLAPIPKE 117
>At2g26470.1 68415.m03176 expressed protein contains PF02586:
Uncharacterized ACR, COG2135; weak similarity to NF-M
protein (GI:205688) [Rattus norvegicus]
Length = 487
Score = 27.9 bits (59), Expect = 5.5
Identities = 14/40 (35%), Positives = 21/40 (52%)
Frame = +2
Query: 176 EECTDDDNFSIDLPLTTPEQKDDFMNAIKPFETLNIESDI 295
E + D N +DL +KD F ++IK E L+ E D+
Sbjct: 260 ETKSTDANIIVDLKKEPTAEKDTFSDSIKKIEELDGEKDM 299
>At1g63120.1 68414.m07133 rhomboid family protein contains PFAM
domain PF01694, Rhomboid family
Length = 317
Score = 27.9 bits (59), Expect = 5.5
Identities = 11/23 (47%), Positives = 13/23 (56%)
Frame = +3
Query: 528 TRFCAAFLSTSRSNCGWNATRTN 596
T FC F+ R GW A+RTN
Sbjct: 235 TGFCLGFVLLVRPQYGWEASRTN 257
>At5g30495.2 68418.m03660 expressed protein
Length = 196
Score = 27.5 bits (58), Expect = 7.3
Identities = 12/37 (32%), Positives = 18/37 (48%)
Frame = +2
Query: 134 NDPKNVTLRLNSVPEECTDDDNFSIDLPLTTPEQKDD 244
NDPK + + ++ T + F + P TPE K D
Sbjct: 57 NDPKKINKMIRKQIKDTTGSNWFDMPAPTMTPELKRD 93
>At5g30495.1 68418.m03659 expressed protein
Length = 196
Score = 27.5 bits (58), Expect = 7.3
Identities = 12/37 (32%), Positives = 18/37 (48%)
Frame = +2
Query: 134 NDPKNVTLRLNSVPEECTDDDNFSIDLPLTTPEQKDD 244
NDPK + + ++ T + F + P TPE K D
Sbjct: 57 NDPKKINKMIRKQIKDTTGSNWFDMPAPTMTPELKRD 93
>At3g29710.1 68416.m03745 hypothetical protein contains Pfam profile
PF03384: Drosophila protein of unknown function, DUF287
Length = 669
Score = 27.5 bits (58), Expect = 7.3
Identities = 17/73 (23%), Positives = 35/73 (47%), Gaps = 1/73 (1%)
Frame = +2
Query: 176 EECTDDDNFSIDLPLTTPEQKDDFMNAIKPFETLNIESD-IIKTEQTDAPATSGDDNNNR 352
EE + + P+ E++DD + I+ E + ESD + E++ D+ +
Sbjct: 133 EETETNKELACANPVEEAERQDDGLTVIEEEEERSSESDEDVNVEKSVEDEGHEDERDED 192
Query: 353 KVVDANEDEYTVD 391
+V+ + +E T+D
Sbjct: 193 VIVEKSGEERTID 205
>At3g13280.1 68416.m01672 expressed protein contains Pfam profile
PF04396: Protein of unknown function, DUF537; expression
supported by MPSS
Length = 383
Score = 27.5 bits (58), Expect = 7.3
Identities = 28/122 (22%), Positives = 52/122 (42%)
Frame = +2
Query: 41 FQSLINLLNLQATTIMSLNSNKIKADLIPDENDPKNVTLRLNSVPEECTDDDNFSIDLPL 220
F+ L +L T N + + + P+E +P ++ + EEC + L
Sbjct: 265 FKELCKMLEFDGKTCNKGNGSTM-VKIRPEEGNPCFTSVTM----EEC-----MMMMRKL 314
Query: 221 TTPEQKDDFMNAIKPFETLNIESDIIKTEQTDAPATSGDDNNNRKVVDANEDEYTVDGLK 400
T E + N KP +++ ++ TEQ D P +S +RK + + + T+ +
Sbjct: 315 KTEEAAVEEENPEKPIQSIQVQRSSA-TEQEDKPVSSVAKRASRKSISSCSSQDTILTNR 373
Query: 401 LK 406
LK
Sbjct: 374 LK 375
>At2g04030.2 68415.m00372 heat shock protein, putative strong
similarity to heat shock protein [Arabidopsis thaliana]
GI:1906830; contains Pfam profiles PF02518: ATPase,
histidine kinase-, DNA gyrase B-, and HSP90-like domain
protein, PF00183: Hsp90 protein
Length = 777
Score = 27.5 bits (58), Expect = 7.3
Identities = 19/89 (21%), Positives = 35/89 (39%), Gaps = 1/89 (1%)
Frame = +2
Query: 119 LIPDENDPKNVTLRLNSVPEECTDDDNFSIDLPLTTPEQKDDFMNAIK-PFETLNIESDI 295
LI +E DP N+ R + +DD + ++ + P T +S
Sbjct: 236 LIREETDPDNILRRGTQITLYLREDDKYEFAESTRIKNLVKNYSQFVGFPIYTWQEKSRT 295
Query: 296 IKTEQTDAPATSGDDNNNRKVVDANEDEY 382
I+ E+ D P G++ +K ++Y
Sbjct: 296 IEVEE-DEPVKEGEEGEPKKKKTTKTEKY 323
>At2g04030.1 68415.m00371 heat shock protein, putative strong
similarity to heat shock protein [Arabidopsis thaliana]
GI:1906830; contains Pfam profiles PF02518: ATPase,
histidine kinase-, DNA gyrase B-, and HSP90-like domain
protein, PF00183: Hsp90 protein
Length = 780
Score = 27.5 bits (58), Expect = 7.3
Identities = 19/89 (21%), Positives = 35/89 (39%), Gaps = 1/89 (1%)
Frame = +2
Query: 119 LIPDENDPKNVTLRLNSVPEECTDDDNFSIDLPLTTPEQKDDFMNAIK-PFETLNIESDI 295
LI +E DP N+ R + +DD + ++ + P T +S
Sbjct: 236 LIREETDPDNILRRGTQITLYLREDDKYEFAESTRIKNLVKNYSQFVGFPIYTWQEKSRT 295
Query: 296 IKTEQTDAPATSGDDNNNRKVVDANEDEY 382
I+ E+ D P G++ +K ++Y
Sbjct: 296 IEVEE-DEPVKEGEEGEPKKKKTTKTEKY 323
>At1g54770.1 68414.m06245 expressed protein
Length = 189
Score = 27.5 bits (58), Expect = 7.3
Identities = 16/65 (24%), Positives = 30/65 (46%), Gaps = 4/65 (6%)
Frame = +2
Query: 62 LNLQATTIMSLNSNKIKADLIPD----ENDPKNVTLRLNSVPEECTDDDNFSIDLPLTTP 229
L+L+ + S + K++L+ NDP+ + + ++ T + F + P TP
Sbjct: 22 LDLKTGSTRSKTAESSKSELVDGLCLPPNDPRKINKMIRKQLKDTTGSNWFDMPAPTMTP 81
Query: 230 EQKDD 244
E K D
Sbjct: 82 ELKRD 86
>At1g18950.1 68414.m02358 aminoacyl-tRNA synthetase family contains
aminoacyl-transfer RNA synthetases class-II signature 1,
PROSITE:PS00179
Length = 766
Score = 27.5 bits (58), Expect = 7.3
Identities = 18/65 (27%), Positives = 31/65 (47%)
Frame = +2
Query: 224 TPEQKDDFMNAIKPFETLNIESDIIKTEQTDAPATSGDDNNNRKVVDANEDEYTVDGLKL 403
T +D NA P ET + E + + +A T+G +NN + D+ V+G+
Sbjct: 675 TMGSQDSEENANDP-ETKSGEEEEPRDVNDNADTTNGKENNQLNKSNGTTDQEEVEGVVG 733
Query: 404 KSKYV 418
K +Y+
Sbjct: 734 KRRYL 738
>At5g61330.1 68418.m07696 rRNA processing protein-related contains
weak similarity to rRNA processing protein EBP2
(EBNA1-binding protein homolog) (Swiss-Prot:P36049)
[Saccharomyces cerevisiae]
Length = 436
Score = 27.1 bits (57), Expect = 9.6
Identities = 21/83 (25%), Positives = 37/83 (44%), Gaps = 4/83 (4%)
Frame = +2
Query: 158 RLNSVPEECTDDDNFSIDLPLTTPEQ----KDDFMNAIKPFETLNIESDIIKTEQTDAPA 325
RL+S E+ +D +N + + +DD +++++ E + E D TE+ D
Sbjct: 12 RLDSESEDISDQENLKAESDNEDDQLPDGIEDDEVDSMEDDEGESEEDDEGDTEEDDEGD 71
Query: 326 TSGDDNNNRKVVDANEDEYTVDG 394
+ DD K + E E DG
Sbjct: 72 SEEDDEGENKEDEDGESEDFEDG 94
>At5g15810.1 68418.m01850 N2,N2-dimethylguanosine tRNA
methyltransferase family protein similar to SP|Q9P804
N(2),N(2)-dimethylguanosine tRNA methyltransferase (EC
2.1.1.32) (tRNA(guanine-26,N(2)-N(2)) methyltransferase)
{Schizosaccharomyces pombe}; contains Pfam profile
PF02005: N2,N2-dimethylguanosine tRNA methyltransferase
Length = 691
Score = 27.1 bits (57), Expect = 9.6
Identities = 13/44 (29%), Positives = 22/44 (50%)
Frame = +2
Query: 281 IESDIIKTEQTDAPATSGDDNNNRKVVDANEDEYTVDGLKLKSK 412
+E D+ +T + + P +GDDN + + T DG K +K
Sbjct: 167 VEKDVSETSKEETPTENGDDNGK---TNGEHEVTTQDGPKEAAK 207
>At3g22220.1 68416.m02803 hAT dimerisation domain-containing protein
contains Pfam profiles PF04937: Protein of unknown
function (DUF 659), PF05699 hAT family dimerisation
domain
Length = 761
Score = 27.1 bits (57), Expect = 9.6
Identities = 20/67 (29%), Positives = 30/67 (44%), Gaps = 3/67 (4%)
Frame = +2
Query: 338 DNNNRKVVDANEDEYTVDGLKLKSKYVAYY--KCLKILVDFLVMYVSKETNMKE-YEQVY 508
D N +V+ ED Y G KL Y + Y C +D ++ K ++E EQ
Sbjct: 320 DTNVVQVITKCEDHYAAAGKKLMDVYPSLYWVPCAAHCIDKMLEEFGKMDWIREIIEQAR 379
Query: 509 TLGRQLY 529
T+ R +Y
Sbjct: 380 TVTRIIY 386
>At2g45220.1 68415.m05630 pectinesterase family protein contains
Pfam profile: PF01095 pectinesterase
Length = 511
Score = 27.1 bits (57), Expect = 9.6
Identities = 14/48 (29%), Positives = 24/48 (50%)
Frame = +2
Query: 224 TPEQKDDFMNAIKPFETLNIESDIIKTEQTDAPATSGDDNNNRKVVDA 367
TP +KD F + +KP + ++S K A SG+ ++ +DA
Sbjct: 179 TPPEKDGFPSWVKPGDRKLLQSSTPKDNAVVAKDGSGNFKTIKEAIDA 226
>At1g77680.1 68414.m09044 ribonuclease II family protein weak
similarity to SP|P37202 Mitotic control protein dis3
{Schizosaccharomyces pombe}; contains Pfam profile
PF00773: RNB-like protein
Length = 1055
Score = 27.1 bits (57), Expect = 9.6
Identities = 24/85 (28%), Positives = 39/85 (45%), Gaps = 2/85 (2%)
Frame = +2
Query: 350 RKVVDANEDEYTVDGLKLKSKYVAYYKCLKILVDFLVMYVSKETNMKE--YEQVYTLGRQ 523
RKV DA + YT LK K + + + + F+ +Y+SK + Y+Q+ L
Sbjct: 893 RKVRDACDKLYTWFVLKQKEIFPCEARVMNLGSRFMTVYISKLGIERRIYYDQIEGLCAD 952
Query: 524 LYEVLRSIFVDEPFKLWLERNTHEF 598
E ++ VD KL+ +R F
Sbjct: 953 WLEATSTLIVD---KLYSKRGGRGF 974
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,111,719
Number of Sequences: 28952
Number of extensions: 250589
Number of successful extensions: 974
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 942
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 974
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1206913392
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -