Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc19f17
         (511 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z66515-4|CAA91350.1|  153|Caenorhabditis elegans Hypothetical pr...    68   3e-12
Z69903-7|CAA93776.1| 1607|Caenorhabditis elegans Hypothetical pr...    29   2.6  
Z69660-1|CAA93489.1| 1607|Caenorhabditis elegans Hypothetical pr...    29   2.6  

>Z66515-4|CAA91350.1|  153|Caenorhabditis elegans Hypothetical
           protein R53.4 protein.
          Length = 153

 Score = 68.1 bits (159), Expect = 3e-12
 Identities = 31/65 (47%), Positives = 38/65 (58%)
 Frame = +1

Query: 94  GDYPKEYNPAVHGPYDPARYYGKPDTPFSQLKLNEIGSWFGRRSKTPSAVAGAFSRAWWR 273
           G + K +N  VHGPY   RYYGK DT F  +KL ++ +W  RR KTPSA    F R  WR
Sbjct: 47  GLFDKRWNKNVHGPYCHWRYYGKLDTKFMDVKLGDLPAWMARREKTPSAFYNEFMRNIWR 106

Query: 274 WQHKY 288
             + Y
Sbjct: 107 VHNLY 111


>Z69903-7|CAA93776.1| 1607|Caenorhabditis elegans Hypothetical
           protein F39B1.1 protein.
          Length = 1607

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 16/58 (27%), Positives = 29/58 (50%)
 Frame = +1

Query: 154 YGKPDTPFSQLKLNEIGSWFGRRSKTPSAVAGAFSRAWWRWQHKYVQPKKVGMAPFYQ 327
           +  PD P  Q K+N+I   +   S  PS+ +G+ + +   ++  Y +P + G  P  Q
Sbjct: 34  FESPDEPARQRKINQIKQLYEANSPGPSSYSGSLATSPIDFRPVYNEP-RAGPIPHSQ 90


>Z69660-1|CAA93489.1| 1607|Caenorhabditis elegans Hypothetical
           protein F39B1.1 protein.
          Length = 1607

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 16/58 (27%), Positives = 29/58 (50%)
 Frame = +1

Query: 154 YGKPDTPFSQLKLNEIGSWFGRRSKTPSAVAGAFSRAWWRWQHKYVQPKKVGMAPFYQ 327
           +  PD P  Q K+N+I   +   S  PS+ +G+ + +   ++  Y +P + G  P  Q
Sbjct: 34  FESPDEPARQRKINQIKQLYEANSPGPSSYSGSLATSPIDFRPVYNEP-RAGPIPHSQ 90


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,521,910
Number of Sequences: 27780
Number of extensions: 236708
Number of successful extensions: 587
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 557
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 587
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 988489374
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)