Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc19f17
         (511 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g20980.1 68414.m02626 SPL1-Related2 protein (SPL1R2) strong s...    29   2.4  
At2g02835.1 68415.m00229 hypothetical protein                          28   3.2  
At1g52030.2 68414.m05870 myrosinase-binding protein, putative (F...    27   5.5  
At1g52030.1 68414.m05869 myrosinase-binding protein, putative (F...    27   5.5  
At5g39400.1 68418.m04773 pollen specific phosphatase, putative /...    27   7.3  
At3g10660.1 68416.m01282 calcium-dependent protein kinase isofor...    27   7.3  
At5g22760.1 68418.m02658 PHD finger family protein contains Pfam...    27   9.7  
At1g76990.3 68414.m08966 ACT domain containing protein low simil...    27   9.7  
At1g76990.2 68414.m08965 ACT domain containing protein low simil...    27   9.7  
At1g76990.1 68414.m08964 ACT domain containing protein low simil...    27   9.7  
At1g01130.1 68414.m00016 expressed protein ; expression supporte...    27   9.7  

>At1g20980.1 68414.m02626 SPL1-Related2 protein (SPL1R2) strong
           similarity to SPL1-Related2 protein [Arabidopsis
           thaliana] GI:6006427; contains Pfam profile PF03110: SBP
           domain
          Length = 1035

 Score = 28.7 bits (61), Expect = 2.4
 Identities = 17/40 (42%), Positives = 22/40 (55%)
 Frame = +3

Query: 147 TLLWKT*YSIQSVEAERNRFVVRSPQQDSVCRGRSFQSSL 266
           T L K  +   SV  ER+    +SP QDS  RG+  +SSL
Sbjct: 349 TNLEKRTFGFSSVGGERSSSSNQSPSQDSDSRGQDTRSSL 388


>At2g02835.1 68415.m00229 hypothetical protein
          Length = 198

 Score = 28.3 bits (60), Expect = 3.2
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +1

Query: 103 PKEYNPAVHGPYDPARYYGKPDTPFSQL 186
           P+EY  ++  PY P      PD+PF+ L
Sbjct: 121 PEEYEDSLISPYIPEAVLRSPDSPFALL 148


>At1g52030.2 68414.m05870 myrosinase-binding protein, putative
           (F-ATMBP) identical to SP|Q9SAV1 Myrosinase binding
           protein-like f-AtMBP [Arabidopsis thaliana]; similar to
           myrosinase binding protein GI:1711295 from [Brassica
           napus]; contains Pfam PF01419: Jacalin-like lectin
           domain; identical to cDNA myrosinase-binding
           protein-like protein (MBP1.2)  GI:6760446
          Length = 642

 Score = 27.5 bits (58), Expect = 5.5
 Identities = 12/21 (57%), Positives = 12/21 (57%)
 Frame = +1

Query: 97  DYPKEYNPAVHGPYDPARYYG 159
           DYP EY  AV G YD    YG
Sbjct: 67  DYPNEYITAVGGSYDTVFGYG 87


>At1g52030.1 68414.m05869 myrosinase-binding protein, putative
           (F-ATMBP) identical to SP|Q9SAV1 Myrosinase binding
           protein-like f-AtMBP [Arabidopsis thaliana]; similar to
           myrosinase binding protein GI:1711295 from [Brassica
           napus]; contains Pfam PF01419: Jacalin-like lectin
           domain; identical to cDNA myrosinase-binding
           protein-like protein (MBP1.2)  GI:6760446
          Length = 642

 Score = 27.5 bits (58), Expect = 5.5
 Identities = 12/21 (57%), Positives = 12/21 (57%)
 Frame = +1

Query: 97  DYPKEYNPAVHGPYDPARYYG 159
           DYP EY  AV G YD    YG
Sbjct: 67  DYPNEYITAVGGSYDTVFGYG 87


>At5g39400.1 68418.m04773 pollen specific phosphatase, putative /
           phosphatase and tensin, putative (PTEN1) identical to
           phosphatase and tensin homolog [Arabidopsis thaliana]
           GI:21535746
          Length = 412

 Score = 27.1 bits (57), Expect = 7.3
 Identities = 12/33 (36%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
 Frame = +1

Query: 82  NMAFGDYPKEYNPAVHGPYDPARYYGKPDT-PF 177
           +M   D+ K YN  +   YDP  +YG+ +  PF
Sbjct: 86  DMRHPDHYKVYNLCIEESYDPDNFYGRVERFPF 118


>At3g10660.1 68416.m01282 calcium-dependent protein kinase isoform 2
           (CPK2) identical to calcium-dependent protein kinase
           isoform 2 [Arabidopsis thaliana] gi|9837343|gb|AAG00535;
           contains protein kinase domain, Pfam:PF00069; contains
           EF hand domain (calcium-binding EF-hand), Pfam:PF00036,
           INTERPRO:IPR002048
          Length = 646

 Score = 27.1 bits (57), Expect = 7.3
 Identities = 13/24 (54%), Positives = 17/24 (70%)
 Frame = -2

Query: 261 STESSGHGRRSLAAATEPRTDFVQ 190
           S+ S G+G+ S  AA+EP TD VQ
Sbjct: 34  SSSSHGNGQVSKEAASEPATDQVQ 57


>At5g22760.1 68418.m02658 PHD finger family protein contains Pfam
            domain, PF00628: PHD-finger
          Length = 1566

 Score = 26.6 bits (56), Expect = 9.7
 Identities = 25/71 (35%), Positives = 33/71 (46%), Gaps = 3/71 (4%)
 Frame = -2

Query: 237  RRSL-AAATEPRTDFVQLQLTEWSIRFSIVACRIVRPMYSRIILLGVITESHIFRKARCT 61
            RRS+  AA E   +  QL L    +  +I    +VRP  +   + G  TE+ IFR A   
Sbjct: 918  RRSIWKAAVESSKNISQLALQVRYLDMNIRWSELVRPEQNVQDVKGPETEATIFRNASIC 977

Query: 60   FLKI--NSSRY 34
              KI  N  RY
Sbjct: 978  VKKIIDNKVRY 988


>At1g76990.3 68414.m08966 ACT domain containing protein low
           similarity to uridylyltransferase SP|P56884 from
           Rhizobium meliloti; contains Pfam ACT domain PF01842
          Length = 453

 Score = 26.6 bits (56), Expect = 9.7
 Identities = 13/38 (34%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
 Frame = -1

Query: 223 CGDRTTNRFRSAST-D*MEYQVFHSSVQDRKAHVQQDY 113
           C DR    F    T   M+Y VFH+++    +H  Q+Y
Sbjct: 271 CEDRPKLMFDIVCTLTDMQYIVFHATISSSGSHASQEY 308


>At1g76990.2 68414.m08965 ACT domain containing protein low
           similarity to uridylyltransferase SP|P56884 from
           Rhizobium meliloti; contains Pfam ACT domain PF01842
          Length = 453

 Score = 26.6 bits (56), Expect = 9.7
 Identities = 13/38 (34%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
 Frame = -1

Query: 223 CGDRTTNRFRSAST-D*MEYQVFHSSVQDRKAHVQQDY 113
           C DR    F    T   M+Y VFH+++    +H  Q+Y
Sbjct: 271 CEDRPKLMFDIVCTLTDMQYIVFHATISSSGSHASQEY 308


>At1g76990.1 68414.m08964 ACT domain containing protein low
           similarity to uridylyltransferase SP|P56884 from
           Rhizobium meliloti; contains Pfam ACT domain PF01842
          Length = 453

 Score = 26.6 bits (56), Expect = 9.7
 Identities = 13/38 (34%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
 Frame = -1

Query: 223 CGDRTTNRFRSAST-D*MEYQVFHSSVQDRKAHVQQDY 113
           C DR    F    T   M+Y VFH+++    +H  Q+Y
Sbjct: 271 CEDRPKLMFDIVCTLTDMQYIVFHATISSSGSHASQEY 308


>At1g01130.1 68414.m00016 expressed protein ; expression supported
           by MPSS
          Length = 180

 Score = 26.6 bits (56), Expect = 9.7
 Identities = 13/26 (50%), Positives = 15/26 (57%)
 Frame = +2

Query: 194 TKSVRGSVAAARLRLPWPELSVEPGG 271
           T S  G VAA R+  PW + S E GG
Sbjct: 56  TASASGEVAARRVLPPWMDPSYEWGG 81


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,805,886
Number of Sequences: 28952
Number of extensions: 220953
Number of successful extensions: 647
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 632
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 646
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 917929344
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)