Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc19f16
(484 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC328.10c |rps502|rps5-2|40S ribosomal protein S5|Schizosaccha... 141 4e-35
SPAC8C9.08 |rps5||40S ribosomal protein S5|Schizosaccharomyces p... 139 2e-34
SPAC16E8.10c |||mitochondrial ribosomal protein subunit S7|Schiz... 38 0.001
SPCC548.05c |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 29 0.37
SPBC8D2.18c |||adenosylhomocysteinase |Schizosaccharomyces pombe... 27 1.5
SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyce... 26 3.4
SPCC736.08 |cbf11||CBF1/Su|Schizosaccharomyces pombe|chr 3|||Manual 25 4.5
SPAPJ691.02 |||yippee-like protein|Schizosaccharomyces pombe|chr... 25 6.0
SPBC776.13 |cnd1||condensin subunit Cnd1|Schizosaccharomyces pom... 25 6.0
>SPAC328.10c |rps502|rps5-2|40S ribosomal protein
S5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 203
Score = 141 bits (342), Expect = 4e-35
Identities = 74/126 (58%), Positives = 93/126 (73%)
Frame = +3
Query: 105 AGSVVVETMSLPQAADIPEIKLFGRWSCYDVQVSDMSLQDYISVKEKYAKYLPHSAGRYA 284
A S++ + +SL + IKLF ++ V+V D+SL DYI++ + LPH+AGR+
Sbjct: 2 AASIIPKEVSLDETG---HIKLFNKFPFEGVEVKDISLVDYITIGN--GQPLPHTAGRFQ 56
Query: 285 HKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAFEIIHLLTGENPLQVLVTAII 464
KRFRKA+C IVERLTNSLMM+GRNNGKKL+A RIVKHAFEII LLT +NPLQVLV A+
Sbjct: 57 TKRFRKARCFIVERLTNSLMMNGRNNGKKLLATRIVKHAFEIIALLTDQNPLQVLVDAVA 116
Query: 465 NSGPRE 482
GPRE
Sbjct: 117 ACGPRE 122
>SPAC8C9.08 |rps5||40S ribosomal protein S5|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 203
Score = 139 bits (336), Expect = 2e-34
Identities = 74/122 (60%), Positives = 89/122 (72%), Gaps = 3/122 (2%)
Frame = +3
Query: 126 TMSLPQAADIPE---IKLFGRWSCYDVQVSDMSLQDYISVKEKYAKYLPHSAGRYAHKRF 296
T SL + E IKLF ++ V+V D+SL DYI++ + LPH+AGR+ KRF
Sbjct: 3 TSSLTPGVSLDENGSIKLFNKFPFEGVEVKDISLVDYITIGN--GQPLPHTAGRFQTKRF 60
Query: 297 RKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAFEIIHLLTGENPLQVLVTAIINSGP 476
RKA+C IVERLTNSLMM+GRNNGKKL+A RIVKHAFEII LLT +NPLQVLV A+ GP
Sbjct: 61 RKARCFIVERLTNSLMMNGRNNGKKLLATRIVKHAFEIIALLTDQNPLQVLVDAVAACGP 120
Query: 477 RE 482
RE
Sbjct: 121 RE 122
>SPAC16E8.10c |||mitochondrial ribosomal protein subunit
S7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 259
Score = 37.5 bits (83), Expect = 0.001
Identities = 23/53 (43%), Positives = 28/53 (52%)
Frame = +3
Query: 318 VERLTNSLMMHGRNNGKKLMAVRIVKHAFEIIHLLTGENPLQVLVTAIINSGP 476
V+ L N +M +GKK A +IV A II TGENP+ VL AI P
Sbjct: 126 VQHLVNLIM----RDGKKAKAEKIVATALSIIQKETGENPIDVLKQAIAEISP 174
>SPCC548.05c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 468
Score = 29.1 bits (62), Expect = 0.37
Identities = 14/33 (42%), Positives = 17/33 (51%)
Frame = +2
Query: 377 GRTYCQTCV*NYSLVNWRKPSASTRDCHYQLWT 475
G TYC C L+NW K S S C +L+T
Sbjct: 101 GHTYCYEC-----LLNWLKESKSCPTCRQKLYT 128
>SPBC8D2.18c |||adenosylhomocysteinase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 27.1 bits (57), Expect = 1.5
Identities = 16/48 (33%), Positives = 27/48 (56%)
Frame = +3
Query: 141 QAADIPEIKLFGRWSCYDVQVSDMSLQDYISVKEKYAKYLPHSAGRYA 284
+ ADI + FGR ++++++ + I+V+EKYAK P R A
Sbjct: 7 KVADI-SLAAFGR---KELEIAENEMPGLIAVREKYAKSQPLKGARIA 50
>SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 674
Score = 25.8 bits (54), Expect = 3.4
Identities = 12/41 (29%), Positives = 22/41 (53%)
Frame = +2
Query: 326 PYKLSNDARSEQWQKTDGRTYCQTCV*NYSLVNWRKPSAST 448
PYK+ + + W + G+TY + + + L R+ +AST
Sbjct: 138 PYKIVEHSNGDAWLEARGKTYSPSQIGGFILSKMRE-TAST 177
>SPCC736.08 |cbf11||CBF1/Su|Schizosaccharomyces pombe|chr 3|||Manual
Length = 613
Score = 25.4 bits (53), Expect = 4.5
Identities = 16/54 (29%), Positives = 28/54 (51%)
Frame = -2
Query: 303 LYGNACVHTCQLNEVNILRTSL*RKCSPAETYQRLAHRSNSICRKA*FQECRRL 142
L N C+ LNE ++ + SL R P++ ++ R +S+ +K+ E R L
Sbjct: 147 LLNNCCIGIANLNEDSVHKISLTRSGKPSQLV-TVSCRHSSVIQKSYGSEKRYL 199
>SPAPJ691.02 |||yippee-like protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 131
Score = 25.0 bits (52), Expect = 6.0
Identities = 10/15 (66%), Positives = 10/15 (66%)
Frame = +1
Query: 130 CLYHKPPTFLKSSFS 174
C H P TFL SSFS
Sbjct: 117 CFIHPPITFLSSSFS 131
>SPBC776.13 |cnd1||condensin subunit Cnd1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1158
Score = 25.0 bits (52), Expect = 6.0
Identities = 14/47 (29%), Positives = 21/47 (44%)
Frame = +3
Query: 276 RYAHKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAFEIIH 416
+Y KR A+ +V R H R N KL + + H F ++H
Sbjct: 390 KYPRKRQEIAE--LVIRCLQDRSSHVRRNAIKLFSKLLTTHPFSVMH 434
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,047,967
Number of Sequences: 5004
Number of extensions: 41470
Number of successful extensions: 109
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 102
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 107
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 186042952
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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