Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc19f16
(484 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC018151-1|AAH18151.1| 204|Homo sapiens ribosomal protein S5 pr... 215 9e-56
BC015405-1|AAH15405.1| 204|Homo sapiens ribosomal protein S5 pr... 215 9e-56
AK223106-1|BAD96826.1| 204|Homo sapiens ribosomal protein S5 va... 215 9e-56
AB061853-1|BAB79493.1| 204|Homo sapiens ribosomal protein S5 pr... 215 9e-56
U14970-1|AAA85658.1| 204|Homo sapiens ribosomal protein S5 prot... 210 2e-54
AB209803-1|BAD93040.1| 107|Homo sapiens ribosomal protein S5 va... 92 8e-19
AB231860-1|BAE19678.1| 1640|Homo sapiens hypothetical protein pr... 34 0.23
AL513320-1|CAI14334.1| 1229|Homo sapiens multiple EGF-like-domai... 31 2.1
AL512413-3|CAH70834.1| 1229|Homo sapiens multiple EGF-like-domai... 31 2.1
AB011539-1|BAA32467.2| 1246|Homo sapiens MEGF6 protein. 31 2.1
D86966-1|BAA13202.2| 1317|Homo sapiens KIAA0211 protein. 31 2.8
BC112234-1|AAI12235.1| 1267|Homo sapiens zinc finger protein 592... 31 2.8
BC112232-1|AAI12233.1| 1267|Homo sapiens zinc finger protein 592... 31 2.8
BC094688-1|AAH94688.1| 1267|Homo sapiens zinc finger protein 592... 31 2.8
AK126695-1|BAC86646.1| 398|Homo sapiens protein ( Homo sapiens ... 30 4.9
AK023048-1|BAB14374.1| 171|Homo sapiens protein ( Homo sapiens ... 30 4.9
>BC018151-1|AAH18151.1| 204|Homo sapiens ribosomal protein S5
protein.
Length = 204
Score = 215 bits (524), Expect = 9e-56
Identities = 99/115 (86%), Positives = 107/115 (93%)
Frame = +3
Query: 138 PQAADIPEIKLFGRWSCYDVQVSDMSLQDYISVKEKYAKYLPHSAGRYAHKRFRKAQCPI 317
P A+ P+IKLFG+WS DVQ++D+SLQDYI+VKEKYAKYLPHSAGRYA KRFRKAQCPI
Sbjct: 9 PAVAETPDIKLFGKWSTDDVQINDISLQDYIAVKEKYAKYLPHSAGRYAAKRFRKAQCPI 68
Query: 318 VERLTNSLMMHGRNNGKKLMAVRIVKHAFEIIHLLTGENPLQVLVTAIINSGPRE 482
VERLTNS+MMHGRNNGKKLM VRIVKHAFEIIHLLTGENPLQVLV AIINSGPRE
Sbjct: 69 VERLTNSMMMHGRNNGKKLMTVRIVKHAFEIIHLLTGENPLQVLVNAIINSGPRE 123
>BC015405-1|AAH15405.1| 204|Homo sapiens ribosomal protein S5
protein.
Length = 204
Score = 215 bits (524), Expect = 9e-56
Identities = 99/115 (86%), Positives = 107/115 (93%)
Frame = +3
Query: 138 PQAADIPEIKLFGRWSCYDVQVSDMSLQDYISVKEKYAKYLPHSAGRYAHKRFRKAQCPI 317
P A+ P+IKLFG+WS DVQ++D+SLQDYI+VKEKYAKYLPHSAGRYA KRFRKAQCPI
Sbjct: 9 PAVAETPDIKLFGKWSTDDVQINDISLQDYIAVKEKYAKYLPHSAGRYAAKRFRKAQCPI 68
Query: 318 VERLTNSLMMHGRNNGKKLMAVRIVKHAFEIIHLLTGENPLQVLVTAIINSGPRE 482
VERLTNS+MMHGRNNGKKLM VRIVKHAFEIIHLLTGENPLQVLV AIINSGPRE
Sbjct: 69 VERLTNSMMMHGRNNGKKLMTVRIVKHAFEIIHLLTGENPLQVLVNAIINSGPRE 123
>AK223106-1|BAD96826.1| 204|Homo sapiens ribosomal protein S5
variant protein.
Length = 204
Score = 215 bits (524), Expect = 9e-56
Identities = 99/115 (86%), Positives = 107/115 (93%)
Frame = +3
Query: 138 PQAADIPEIKLFGRWSCYDVQVSDMSLQDYISVKEKYAKYLPHSAGRYAHKRFRKAQCPI 317
P A+ P+IKLFG+WS DVQ++D+SLQDYI+VKEKYAKYLPHSAGRYA KRFRKAQCPI
Sbjct: 9 PAVAETPDIKLFGKWSTDDVQINDISLQDYIAVKEKYAKYLPHSAGRYAAKRFRKAQCPI 68
Query: 318 VERLTNSLMMHGRNNGKKLMAVRIVKHAFEIIHLLTGENPLQVLVTAIINSGPRE 482
VERLTNS+MMHGRNNGKKLM VRIVKHAFEIIHLLTGENPLQVLV AIINSGPRE
Sbjct: 69 VERLTNSMMMHGRNNGKKLMTVRIVKHAFEIIHLLTGENPLQVLVNAIINSGPRE 123
>AB061853-1|BAB79493.1| 204|Homo sapiens ribosomal protein S5
protein.
Length = 204
Score = 215 bits (524), Expect = 9e-56
Identities = 99/115 (86%), Positives = 107/115 (93%)
Frame = +3
Query: 138 PQAADIPEIKLFGRWSCYDVQVSDMSLQDYISVKEKYAKYLPHSAGRYAHKRFRKAQCPI 317
P A+ P+IKLFG+WS DVQ++D+SLQDYI+VKEKYAKYLPHSAGRYA KRFRKAQCPI
Sbjct: 9 PAVAETPDIKLFGKWSTDDVQINDISLQDYIAVKEKYAKYLPHSAGRYAAKRFRKAQCPI 68
Query: 318 VERLTNSLMMHGRNNGKKLMAVRIVKHAFEIIHLLTGENPLQVLVTAIINSGPRE 482
VERLTNS+MMHGRNNGKKLM VRIVKHAFEIIHLLTGENPLQVLV AIINSGPRE
Sbjct: 69 VERLTNSMMMHGRNNGKKLMTVRIVKHAFEIIHLLTGENPLQVLVNAIINSGPRE 123
>U14970-1|AAA85658.1| 204|Homo sapiens ribosomal protein S5
protein.
Length = 204
Score = 210 bits (513), Expect = 2e-54
Identities = 97/115 (84%), Positives = 105/115 (91%)
Frame = +3
Query: 138 PQAADIPEIKLFGRWSCYDVQVSDMSLQDYISVKEKYAKYLPHSAGRYAHKRFRKAQCPI 317
P A+ P+IKLFG+WS DVQ++D+SLQDYI+VKEKYAKYLPHSAGRYA FRKAQCPI
Sbjct: 9 PAVAETPDIKLFGKWSTDDVQINDISLQDYIAVKEKYAKYLPHSAGRYAANAFRKAQCPI 68
Query: 318 VERLTNSLMMHGRNNGKKLMAVRIVKHAFEIIHLLTGENPLQVLVTAIINSGPRE 482
VERLTNS+MMHGRNNGKKLM VRIVKHAFEIIHLLTGENPLQVLV AIINSGPRE
Sbjct: 69 VERLTNSMMMHGRNNGKKLMTVRIVKHAFEIIHLLTGENPLQVLVNAIINSGPRE 123
>AB209803-1|BAD93040.1| 107|Homo sapiens ribosomal protein S5
variant protein.
Length = 107
Score = 92.3 bits (219), Expect = 8e-19
Identities = 45/52 (86%), Positives = 46/52 (88%)
Frame = +3
Query: 303 AQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAFEIIHLLTGENPLQVLVTA 458
AQCPIVERLTNS+MMHGRNNGKKLM VRIVKHAFEIIHLLTGE L LV A
Sbjct: 1 AQCPIVERLTNSMMMHGRNNGKKLMTVRIVKHAFEIIHLLTGEVGLCGLVRA 52
>AB231860-1|BAE19678.1| 1640|Homo sapiens hypothetical protein
protein.
Length = 1640
Score = 34.3 bits (75), Expect = 0.23
Identities = 13/31 (41%), Positives = 16/31 (51%)
Frame = -2
Query: 366 CHCSDRASLESL*GAPRLGTGLYGNACVHTC 274
C C + ++ E G R G G YG AC H C
Sbjct: 1423 CSCHNNSTCEPATGTCRCGPGFYGQACEHPC 1453
Score = 29.5 bits (63), Expect = 6.5
Identities = 13/31 (41%), Positives = 16/31 (51%)
Frame = -2
Query: 366 CHCSDRASLESL*GAPRLGTGLYGNACVHTC 274
C+C++R L GA GLYG C TC
Sbjct: 686 CNCANRGRCHRLYGACLCDPGLYGRFCHLTC 716
>AL513320-1|CAI14334.1| 1229|Homo sapiens multiple EGF-like-domains 6
protein.
Length = 1229
Score = 31.1 bits (67), Expect = 2.1
Identities = 12/29 (41%), Positives = 15/29 (51%)
Frame = -2
Query: 366 CHCSDRASLESL*GAPRLGTGLYGNACVH 280
C C + ++ E G R G G YG AC H
Sbjct: 1113 CSCHNNSTCEPATGTCRCGPGFYGQACEH 1141
Score = 29.5 bits (63), Expect = 6.5
Identities = 13/31 (41%), Positives = 16/31 (51%)
Frame = -2
Query: 366 CHCSDRASLESL*GAPRLGTGLYGNACVHTC 274
C+C++R L GA GLYG C TC
Sbjct: 506 CNCANRGRCHRLYGACLCDPGLYGRFCHLTC 536
>AL512413-3|CAH70834.1| 1229|Homo sapiens multiple EGF-like-domains 6
protein.
Length = 1229
Score = 31.1 bits (67), Expect = 2.1
Identities = 12/29 (41%), Positives = 15/29 (51%)
Frame = -2
Query: 366 CHCSDRASLESL*GAPRLGTGLYGNACVH 280
C C + ++ E G R G G YG AC H
Sbjct: 1113 CSCHNNSTCEPATGTCRCGPGFYGQACEH 1141
Score = 29.5 bits (63), Expect = 6.5
Identities = 13/31 (41%), Positives = 16/31 (51%)
Frame = -2
Query: 366 CHCSDRASLESL*GAPRLGTGLYGNACVHTC 274
C+C++R L GA GLYG C TC
Sbjct: 506 CNCANRGRCHRLYGACLCDPGLYGRFCHLTC 536
>AB011539-1|BAA32467.2| 1246|Homo sapiens MEGF6 protein.
Length = 1246
Score = 31.1 bits (67), Expect = 2.1
Identities = 12/29 (41%), Positives = 15/29 (51%)
Frame = -2
Query: 366 CHCSDRASLESL*GAPRLGTGLYGNACVH 280
C C + ++ E G R G G YG AC H
Sbjct: 1130 CSCHNNSTCEPATGTCRCGPGFYGQACEH 1158
Score = 29.5 bits (63), Expect = 6.5
Identities = 13/31 (41%), Positives = 16/31 (51%)
Frame = -2
Query: 366 CHCSDRASLESL*GAPRLGTGLYGNACVHTC 274
C+C++R L GA GLYG C TC
Sbjct: 523 CNCANRGRCHRLYGACLCDPGLYGRFCHLTC 553
>D86966-1|BAA13202.2| 1317|Homo sapiens KIAA0211 protein.
Length = 1317
Score = 30.7 bits (66), Expect = 2.8
Identities = 17/48 (35%), Positives = 24/48 (50%)
Frame = +3
Query: 219 QDYISVKEKYAKYLPHSAGRYAHKRFRKAQCPIVERLTNSLMMHGRNN 362
Q+++ +E Y ++ S GR KR+ QC NSL H RNN
Sbjct: 1039 QEWVPDRESYVSHMKKSHGRTL-KRYPCRQCEQSFHTPNSLRKHIRNN 1085
>BC112234-1|AAI12235.1| 1267|Homo sapiens zinc finger protein 592
protein.
Length = 1267
Score = 30.7 bits (66), Expect = 2.8
Identities = 17/48 (35%), Positives = 24/48 (50%)
Frame = +3
Query: 219 QDYISVKEKYAKYLPHSAGRYAHKRFRKAQCPIVERLTNSLMMHGRNN 362
Q+++ +E Y ++ S GR KR+ QC NSL H RNN
Sbjct: 989 QEWVPDRESYVSHMKKSHGRTL-KRYPCRQCEQSFHTPNSLRKHIRNN 1035
>BC112232-1|AAI12233.1| 1267|Homo sapiens zinc finger protein 592
protein.
Length = 1267
Score = 30.7 bits (66), Expect = 2.8
Identities = 17/48 (35%), Positives = 24/48 (50%)
Frame = +3
Query: 219 QDYISVKEKYAKYLPHSAGRYAHKRFRKAQCPIVERLTNSLMMHGRNN 362
Q+++ +E Y ++ S GR KR+ QC NSL H RNN
Sbjct: 989 QEWVPDRESYVSHMKKSHGRTL-KRYPCRQCEQSFHTPNSLRKHIRNN 1035
>BC094688-1|AAH94688.1| 1267|Homo sapiens zinc finger protein 592
protein.
Length = 1267
Score = 30.7 bits (66), Expect = 2.8
Identities = 17/48 (35%), Positives = 24/48 (50%)
Frame = +3
Query: 219 QDYISVKEKYAKYLPHSAGRYAHKRFRKAQCPIVERLTNSLMMHGRNN 362
Q+++ +E Y ++ S GR KR+ QC NSL H RNN
Sbjct: 989 QEWVPDRESYVSHMKKSHGRTL-KRYPCRQCEQSFHTPNSLRKHIRNN 1035
>AK126695-1|BAC86646.1| 398|Homo sapiens protein ( Homo sapiens
cDNA FLJ44741 fis, clone BRACE3027931. ).
Length = 398
Score = 29.9 bits (64), Expect = 4.9
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = +1
Query: 193 MCKSLICLCRTTFPLKRSTQNIYLIQLA 276
+CKS C+C +T + ST+ Y QLA
Sbjct: 259 VCKSTYCICNSTHCVCNSTRTAYATQLA 286
>AK023048-1|BAB14374.1| 171|Homo sapiens protein ( Homo sapiens
cDNA FLJ12986 fis, clone NT2RP3000055. ).
Length = 171
Score = 29.9 bits (64), Expect = 4.9
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = +1
Query: 193 MCKSLICLCRTTFPLKRSTQNIYLIQLA 276
+CKS C+C +T + ST+ Y QLA
Sbjct: 32 VCKSTYCICNSTHCVCNSTRTAYATQLA 59
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 71,095,813
Number of Sequences: 237096
Number of extensions: 1436426
Number of successful extensions: 2665
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 2567
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2665
length of database: 76,859,062
effective HSP length: 84
effective length of database: 56,942,998
effective search space used: 4327667848
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -