Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc19f16
         (484 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325109-1|ABD14123.1|  177|Apis mellifera complementary sex det...    24   0.98 
DQ325108-1|ABD14122.1|  177|Apis mellifera complementary sex det...    24   0.98 
DQ325107-1|ABD14121.1|  176|Apis mellifera complementary sex det...    24   0.98 
DQ325106-1|ABD14120.1|  177|Apis mellifera complementary sex det...    24   0.98 
AY350615-1|AAQ57657.1|  410|Apis mellifera complementary sex det...    24   0.98 
AF023619-1|AAC39040.1|  355|Apis mellifera arginine kinase protein.    22   4.0  
DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like recept...    21   5.2  
AY739659-1|AAU85298.1|  288|Apis mellifera hyperpolarization-act...    21   5.2  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    21   5.2  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    21   5.2  
AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    21   5.2  
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    21   6.9  
M29491-1|AAA27726.1|   79|Apis mellifera protein ( Bee homeobox-...    21   9.1  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    21   9.1  

>DQ325109-1|ABD14123.1|  177|Apis mellifera complementary sex
           determiner protein.
          Length = 177

 Score = 23.8 bits (49), Expect = 0.98
 Identities = 16/53 (30%), Positives = 23/53 (43%), Gaps = 2/53 (3%)
 Frame = +3

Query: 237 KEKYAKYLPHSAGRYAHK--RFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRI 389
           +  Y KY   S  R   +  R R  +  I+  L+N  + +  NN KKL    I
Sbjct: 53  ENSYRKYRETSKERSRDRKERERSKEPKIISSLSNKTIHNNNNNYKKLQYYNI 105


>DQ325108-1|ABD14122.1|  177|Apis mellifera complementary sex
           determiner protein.
          Length = 177

 Score = 23.8 bits (49), Expect = 0.98
 Identities = 16/53 (30%), Positives = 23/53 (43%), Gaps = 2/53 (3%)
 Frame = +3

Query: 237 KEKYAKYLPHSAGRYAHK--RFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRI 389
           +  Y KY   S  R   +  R R  +  I+  L+N  + +  NN KKL    I
Sbjct: 53  ENSYRKYRETSKERSRDRKERERSKEPKIISSLSNKTIHNNNNNYKKLQYYNI 105


>DQ325107-1|ABD14121.1|  176|Apis mellifera complementary sex
           determiner protein.
          Length = 176

 Score = 23.8 bits (49), Expect = 0.98
 Identities = 16/53 (30%), Positives = 23/53 (43%), Gaps = 2/53 (3%)
 Frame = +3

Query: 237 KEKYAKYLPHSAGRYAHK--RFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRI 389
           +  Y KY   S  R   +  R R  +  I+  L+N  + +  NN KKL    I
Sbjct: 53  ENSYRKYRETSKERSRDRKERERSKEPKIISSLSNKTIHNNNNNYKKLQYYNI 105


>DQ325106-1|ABD14120.1|  177|Apis mellifera complementary sex
           determiner protein.
          Length = 177

 Score = 23.8 bits (49), Expect = 0.98
 Identities = 16/53 (30%), Positives = 23/53 (43%), Gaps = 2/53 (3%)
 Frame = +3

Query: 237 KEKYAKYLPHSAGRYAHK--RFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRI 389
           +  Y KY   S  R   +  R R  +  I+  L+N  + +  NN KKL    I
Sbjct: 53  ENSYRKYRETSKERSRDRKERERSKEPKIISSLSNKTIHNNNNNYKKLQYYNI 105


>AY350615-1|AAQ57657.1|  410|Apis mellifera complementary sex
           determiner protein.
          Length = 410

 Score = 23.8 bits (49), Expect = 0.98
 Identities = 16/53 (30%), Positives = 23/53 (43%), Gaps = 2/53 (3%)
 Frame = +3

Query: 237 KEKYAKYLPHSAGRYAHK--RFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRI 389
           +  Y KY   S  R   +  R R  +  I+  L+N  + +  NN KKL    I
Sbjct: 286 ENSYRKYRETSKERSRDRKERERSKEPKIISSLSNKTIHNNNNNYKKLQYYNI 338


>AF023619-1|AAC39040.1|  355|Apis mellifera arginine kinase protein.
          Length = 355

 Score = 21.8 bits (44), Expect = 4.0
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = -2

Query: 216 ETYQRLAHRSNSICRKA*FQECRRLVVKTWFP 121
           + Y+RL H  N I ++  F    RL   T+ P
Sbjct: 240 QVYRRLVHAVNEIEKRLLFSHNDRLGFLTFCP 271


>DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like receptor
           2 protein.
          Length = 581

 Score = 21.4 bits (43), Expect = 5.2
 Identities = 8/26 (30%), Positives = 16/26 (61%)
 Frame = +3

Query: 387 IVKHAFEIIHLLTGENPLQVLVTAII 464
           +++HAFEI  +L    P+ +++   I
Sbjct: 217 LIEHAFEISTMLFFVLPMTIIIVLYI 242


>AY739659-1|AAU85298.1|  288|Apis mellifera
           hyperpolarization-activated ion channelvariant T
           protein.
          Length = 288

 Score = 21.4 bits (43), Expect = 5.2
 Identities = 5/19 (26%), Positives = 12/19 (63%)
 Frame = -1

Query: 355 RPCIIREFVRRSTIGHWAL 299
           +  +++E +R+   GHW +
Sbjct: 63  KKALMKERIRQKAAGHWVI 81


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 21.4 bits (43), Expect = 5.2
 Identities = 5/19 (26%), Positives = 12/19 (63%)
 Frame = -1

Query: 355 RPCIIREFVRRSTIGHWAL 299
           +  +++E +R+   GHW +
Sbjct: 63  KKALMKERIRQKAAGHWVI 81


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 21.4 bits (43), Expect = 5.2
 Identities = 5/19 (26%), Positives = 12/19 (63%)
 Frame = -1

Query: 355 RPCIIREFVRRSTIGHWAL 299
           +  +++E +R+   GHW +
Sbjct: 63  KKALMKERIRQKAAGHWVI 81


>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 21.4 bits (43), Expect = 5.2
 Identities = 12/24 (50%), Positives = 13/24 (54%)
 Frame = -1

Query: 337 EFVRRSTIGHWALRKRLCAYLPAE 266
           EF R  T    AL K+LC   PAE
Sbjct: 585 EFPRSITRNATALIKKLCRDNPAE 608


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 21.0 bits (42), Expect = 6.9
 Identities = 6/15 (40%), Positives = 10/15 (66%)
 Frame = +3

Query: 45  FSNRKVPIMAEENWN 89
           F N+K+P+   E W+
Sbjct: 550 FKNKKLPVFLAEIWD 564


>M29491-1|AAA27726.1|   79|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H17. ).
          Length = 79

 Score = 20.6 bits (41), Expect = 9.1
 Identities = 12/39 (30%), Positives = 19/39 (48%)
 Frame = +2

Query: 134 FTTSRRHS*NQAFRQMELLRCASL*YVSAGLHFR*REVR 250
           FTT +  S  + FR+ + L  A     S+ LH    +V+
Sbjct: 16  FTTQQLLSLEKKFREKQYLTIAERAEFSSSLHLTETQVK 54


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 20.6 bits (41), Expect = 9.1
 Identities = 7/17 (41%), Positives = 9/17 (52%)
 Frame = +2

Query: 386 YCQTCV*NYSLVNWRKP 436
           +CQ      S + WRKP
Sbjct: 24  FCQPTQRTMSKIQWRKP 40


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 136,314
Number of Sequences: 438
Number of extensions: 2734
Number of successful extensions: 14
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 13174803
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)