Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc19f15
         (677 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g74060.1 68414.m08578 60S ribosomal protein L6 (RPL6B) simila...    99   3e-21
At1g74050.1 68414.m08576 60S ribosomal protein L6 (RPL6C) simila...    98   4e-21
At1g18540.1 68414.m02313 60S ribosomal protein L6 (RPL6A) simila...    93   1e-19
At2g29210.1 68415.m03550 splicing factor PWI domain-containing p...    30   1.6  
At1g20540.1 68414.m02559 transducin family protein / WD-40 repea...    29   3.7  
At2g27270.1 68415.m03277 expressed protein                             28   4.9  

>At1g74060.1 68414.m08578 60S ribosomal protein L6 (RPL6B) similar
           to 60S ribosomal protein L6 (YL 16 like) GB:CAB57309
           from [Cyanophora paradoxa]
          Length = 233

 Score = 98.7 bits (235), Expect = 3e-21
 Identities = 63/171 (36%), Positives = 91/171 (53%)
 Frame = +2

Query: 98  STKKPRNYDLGNGVMRFSKSKMFHKKAKYKFIGXXXXXXXXXXXLTVVVKQIGGEKNGGT 277
           + K  RN DL  GV ++S+S+M+HK+  +                + V            
Sbjct: 7   TAKVNRNPDLIRGVGKYSRSQMYHKRGLWAIKAKNGGVFPRHDAKSKV------------ 54

Query: 278 RTVPLKRRKSFYPTQEKIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVLVG 457
              P+++   FYP ++ ++     R  +K  + +R ++  GTV I+LAGR  GKRVV + 
Sbjct: 55  -DAPVEKPPKFYPAED-VKKPLPNRRTAKPAK-LRASITPGTVLIILAGRFKGKRVVFLK 111

Query: 458 ILPSGLLLVTGPFAFNSCPLRRIPQRYVIGTSTRISLGNFKLPKHFNDDYF 610
            L SGLLLVTGPF  N  PLRR+ Q YVIGTST++ +    L K F+D YF
Sbjct: 112 QLASGLLLVTGPFKINGVPLRRVNQAYVIGTSTKVDISGVTLDK-FDDKYF 161


>At1g74050.1 68414.m08576 60S ribosomal protein L6 (RPL6C) similar
           to 60S ribosomal protein L6 (YL 16 like) GB:CAB57309
           from [Cyanophora paradoxa]
          Length = 233

 Score = 98.3 bits (234), Expect = 4e-21
 Identities = 63/169 (37%), Positives = 90/169 (53%)
 Frame = +2

Query: 104 KKPRNYDLGNGVMRFSKSKMFHKKAKYKFIGXXXXXXXXXXXLTVVVKQIGGEKNGGTRT 283
           K  RN DL  GV ++S+S+M+HK+  +                + V              
Sbjct: 9   KVNRNPDLIRGVGKYSRSQMYHKRGLWAIKAKNGGVFPRHDAKSKV-------------D 55

Query: 284 VPLKRRKSFYPTQEKIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVLVGIL 463
            P+++   FYP ++ ++     R  +K  + +R ++  GTV I+LAGR  GKRVV +  L
Sbjct: 56  APVEKPPKFYPAED-VKKPLPNRRTAKPTK-LRASITPGTVLIILAGRFKGKRVVFLKQL 113

Query: 464 PSGLLLVTGPFAFNSCPLRRIPQRYVIGTSTRISLGNFKLPKHFNDDYF 610
            SGLLLVTGPF  N  PLRR+ Q YVIGTST++ +    L K F+D YF
Sbjct: 114 ASGLLLVTGPFKINGVPLRRVNQAYVIGTSTKVDISGVTLDK-FDDKYF 161


>At1g18540.1 68414.m02313 60S ribosomal protein L6 (RPL6A) similar
           to 60S ribosomal protein L6 GI:7208784 from [Cicer
           arietinum]
          Length = 233

 Score = 93.5 bits (222), Expect = 1e-19
 Identities = 62/169 (36%), Positives = 87/169 (51%)
 Frame = +2

Query: 104 KKPRNYDLGNGVMRFSKSKMFHKKAKYKFIGXXXXXXXXXXXLTVVVKQIGGEKNGGTRT 283
           K  RN DL  GV ++S+S+M+HK+  +                  V              
Sbjct: 9   KVNRNPDLIRGVGKYSRSQMYHKRGLWAIKAKNGGVFPRHDAQPKV-------------D 55

Query: 284 VPLKRRKSFYPTQEKIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVLVGIL 463
            P+++   FYP ++ ++     R   K  + ++ ++  GTV I+LAGR  GKRVV +  L
Sbjct: 56  APVEKPAKFYPAED-VKKPLVNRRKPKPTK-LKASITPGTVLIILAGRFKGKRVVFLKQL 113

Query: 464 PSGLLLVTGPFAFNSCPLRRIPQRYVIGTSTRISLGNFKLPKHFNDDYF 610
            SGLLLVTGPF  N  PLRR+ Q YVIGTST+I +      K F+D YF
Sbjct: 114 SSGLLLVTGPFKINGVPLRRVNQAYVIGTSTKIDISGVNTEK-FDDKYF 161


>At2g29210.1 68415.m03550 splicing factor PWI domain-containing
           protein contains Pfam profile PF01480: PWI domain
          Length = 878

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 12/31 (38%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
 Frame = +2

Query: 287 PLKRRKSFYPTQEKIRASSGGRPFS-KHVRR 376
           P++RR+S  P +E++  S GGR  S  H+++
Sbjct: 525 PVRRRRSLTPDEERVSLSQGGRHTSPSHIKQ 555


>At1g20540.1 68414.m02559 transducin family protein / WD-40 repeat
           family protein contains 6 WD-40 repeats (PF00400);
           similar to Rbap46 polypeptide (GI:9454362) [Gallus
           gallus]
          Length = 351

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
 Frame = +1

Query: 253 WR*EEWGNQNSTPQT*EV--LLPHSGENPCLIWWPS 354
           W+  E   Q ++PQ   V  L  H G+  C++WWPS
Sbjct: 96  WQIPELYGQLNSPQLERVASLDAHVGKINCVLWWPS 131


>At2g27270.1 68415.m03277 expressed protein
          Length = 231

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 21/74 (28%), Positives = 37/74 (50%), Gaps = 1/74 (1%)
 Frame = +2

Query: 314 PTQEKIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVLVGILPSGLLLVTGP 493
           PT++K  A   G   SKH R +  +    + C+       GK ++  G+  + +LL+   
Sbjct: 21  PTKKKTEAKEEGAAASKHSRVVYSD---KSRCL----SKNGKTIIYFGVPAALILLIICV 73

Query: 494 FAFNSCPLR-RIPQ 532
           FAFN   ++ R+P+
Sbjct: 74  FAFNYIAIQPRVPR 87


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,444,270
Number of Sequences: 28952
Number of extensions: 299636
Number of successful extensions: 692
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 677
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 692
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1428369392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)