Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc19f13
(581 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_21059| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.22
SB_39358| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.2
SB_21034| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.7
SB_15981| Best HMM Match : Defensin_2 (HMM E-Value=1.1) 29 3.7
SB_11728| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.7
SB_41864| Best HMM Match : Tropomyosin (HMM E-Value=0.17) 28 4.8
SB_34115| Best HMM Match : F5_F8_type_C (HMM E-Value=0) 28 4.8
SB_4896| Best HMM Match : TFIID_20kDa (HMM E-Value=2.3e-05) 28 4.8
SB_23062| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.4
SB_56128| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.5
SB_30608| Best HMM Match : RFX1_trans_act (HMM E-Value=3.1) 27 8.5
>SB_21059| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1024
Score = 32.7 bits (71), Expect = 0.22
Identities = 21/68 (30%), Positives = 38/68 (55%), Gaps = 1/68 (1%)
Frame = -3
Query: 510 IRTLQLSFSKFTKASVSNSRLSILTIDGLSTEHNSTPSFSVN-KMGSPGMLVSLVSVTTN 334
+ L S +F + +NS LT++ L + + T + S +G ++VS+ SVTTN
Sbjct: 737 VTPLLFSQERFERFEHNNSLEIKLTVNILQNQGSRTMTSSYYLAIGILSIIVSITSVTTN 796
Query: 333 SILLVKLV 310
S++LV ++
Sbjct: 797 SLILVVII 804
>SB_39358| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 147
Score = 30.3 bits (65), Expect = 1.2
Identities = 21/60 (35%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
Frame = +2
Query: 2 KCIKMKRVKCNKVR-TVTEIVNSDEKIQKTYELAEFDLKNLSSLESYETLKIKLALSKYM 178
K + KR K++ T E+V +K +K + L + +LK L E Y+ LK K L KY+
Sbjct: 68 KSAEAKRESKKKIKETERELV---QKGKKPFYLRKSELKKLELAEKYKELKSKGKLQKYL 124
>SB_21034| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1101
Score = 28.7 bits (61), Expect = 3.7
Identities = 15/39 (38%), Positives = 23/39 (58%)
Frame = +2
Query: 449 SREFDTEALVNFENDNCNVRIAKTFGASKRKNTTRSDDY 565
S E + +ALV +DN N +IAK G+S+ +T +Y
Sbjct: 183 SVEREIQALVGKSDDNTNKKIAKMDGSSQIPDTLLPSEY 221
>SB_15981| Best HMM Match : Defensin_2 (HMM E-Value=1.1)
Length = 890
Score = 28.7 bits (61), Expect = 3.7
Identities = 23/81 (28%), Positives = 37/81 (45%), Gaps = 8/81 (9%)
Frame = +2
Query: 140 ETLKIKLALSKYMAMLSTLEMTQPLLEIFRNKADTRQIAAVVF-------STLAFIHNRF 298
+T++ LAL Y E+T LLE+ N+ D + + F S L + RF
Sbjct: 753 DTVEQSLALHVYGVEEPGTEITVDLLEVLHNRLDDATLEVISFMLARNPGSKLTYADVRF 812
Query: 299 -HPLVTNFTNKMEFVVTETND 358
PL T+ T + FV+ ++
Sbjct: 813 IQPLGTSPTVTLRFVIPPVDE 833
>SB_11728| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 521
Score = 28.7 bits (61), Expect = 3.7
Identities = 23/81 (28%), Positives = 37/81 (45%), Gaps = 8/81 (9%)
Frame = +2
Query: 140 ETLKIKLALSKYMAMLSTLEMTQPLLEIFRNKADTRQIAAVVF-------STLAFIHNRF 298
+T++ LAL Y E+T LLE+ N+ D + + F S L + RF
Sbjct: 229 DTVEQSLALHVYGVEEPGTEITVDLLEVLHNRLDDATLEVISFMLARNPGSKLTYADVRF 288
Query: 299 -HPLVTNFTNKMEFVVTETND 358
PL T+ T + FV+ ++
Sbjct: 289 IQPLGTSPTVTLRFVIPPVDE 309
>SB_41864| Best HMM Match : Tropomyosin (HMM E-Value=0.17)
Length = 227
Score = 28.3 bits (60), Expect = 4.8
Identities = 24/85 (28%), Positives = 40/85 (47%), Gaps = 2/85 (2%)
Frame = +2
Query: 11 KMKRVKCNKVRTVTEIVNS-DEKIQKTYELAEFDLKNLSSLESY-ETLKIKLALSKYMAM 184
K+ K N V+ + E+ +EK K Y+L L+ L+ ++ Y ETL+ + K +
Sbjct: 98 KLSEAK-NIVKDIAEVNKKIEEKKAKLYDLERRHLRALNKIDHYEETLRASEQIGKRVVT 156
Query: 185 LSTLEMTQPLLEIFRNKADTRQIAA 259
T + Q EI + D + AA
Sbjct: 157 NYTPKSDQEYQEIISDLRDGIKHAA 181
>SB_34115| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
Length = 1572
Score = 28.3 bits (60), Expect = 4.8
Identities = 15/36 (41%), Positives = 20/36 (55%)
Frame = +2
Query: 344 TETNDTSIPGEPILFTENEGVLLCSVDRPSIVKMLS 451
+E D SI P + N G L+C VDR SI ++ S
Sbjct: 37 SELADVSIEPTPHILVGNGG-LMCGVDRESITRVFS 71
>SB_4896| Best HMM Match : TFIID_20kDa (HMM E-Value=2.3e-05)
Length = 819
Score = 28.3 bits (60), Expect = 4.8
Identities = 23/72 (31%), Positives = 35/72 (48%), Gaps = 2/72 (2%)
Frame = -3
Query: 510 IRTLQLSFSKFT--KASVSNSRLSILTIDGLSTEHNSTPSFSVNKMGSPGMLVSLVSVTT 337
I +++LS S T +S++ ++LS L+ LST STPS S P + V
Sbjct: 183 IGSVELSSSAATPSSSSITTTKLSSLSTPSLSTPSLSTPSLSTPLPSKPS---TTWKVFR 239
Query: 336 NSILLVKLVTSG 301
+LL + V G
Sbjct: 240 TKVLLERSVKEG 251
>SB_23062| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 725
Score = 27.9 bits (59), Expect = 6.4
Identities = 17/68 (25%), Positives = 36/68 (52%)
Frame = +2
Query: 107 DLKNLSSLESYETLKIKLALSKYMAMLSTLEMTQPLLEIFRNKADTRQIAAVVFSTLAFI 286
+ KN+SS Y T K K +L++ + + + + PL+E+FR + ++ + + + +
Sbjct: 275 ETKNMSSF--YWTKKYKKSLARSLREAAVIHLGVPLVELFRYLSGQHRVHCLPSNASSGL 332
Query: 287 HNRFHPLV 310
+R P V
Sbjct: 333 ASRPVPFV 340
>SB_56128| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 42
Score = 27.5 bits (58), Expect = 8.5
Identities = 10/28 (35%), Positives = 17/28 (60%)
Frame = +2
Query: 5 CIKMKRVKCNKVRTVTEIVNSDEKIQKT 88
CIK++ V CN T+ ++VN+ + T
Sbjct: 8 CIKLENVTCNSRYTMNQLVNTSQATSLT 35
>SB_30608| Best HMM Match : RFX1_trans_act (HMM E-Value=3.1)
Length = 476
Score = 27.5 bits (58), Expect = 8.5
Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Frame = -3
Query: 459 NSRLSILTIDGLS-TEHNSTPSFSVNKMGSPGMLVSLVSVTTNSILL 322
NS+ + D S T H + PS+ V+ G GM V + + TT S +L
Sbjct: 113 NSKPTQQVCDSFSLTPHTTLPSYVVSHAGLAGMRVRIPNCTTWSEIL 159
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,500,263
Number of Sequences: 59808
Number of extensions: 346275
Number of successful extensions: 832
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 786
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 831
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1397989795
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -