Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc19f13
         (581 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g29560.1 68417.m04215 expressed protein                             30   1.3  
At2g47680.1 68415.m05955 zinc finger (CCCH type) helicase family...    29   1.7  
At4g11070.1 68417.m01798 WRKY family transcription factor other ...    29   2.3  
At4g31370.1 68417.m04448 fasciclin-like arabinogalactan family p...    28   5.2  
At2g37930.1 68415.m04656 expressed protein                             27   6.9  
At5g49555.1 68418.m06133 amine oxidase-related contains Pfam pro...    27   9.1  
At2g19850.1 68415.m02321 hypothetical protein                          27   9.1  
At1g77580.2 68414.m09032 myosin heavy chain-related low similari...    27   9.1  
At1g77580.1 68414.m09033 myosin heavy chain-related low similari...    27   9.1  
At1g15340.1 68414.m01835 methyl-CpG-binding domain-containing pr...    27   9.1  

>At4g29560.1 68417.m04215 expressed protein 
          Length = 493

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 15/57 (26%), Positives = 26/57 (45%)
 Frame = -3

Query: 465 VSNSRLSILTIDGLSTEHNSTPSFSVNKMGSPGMLVSLVSVTTNSILLVKLVTSGWN 295
           +SN  L     D +    +S P +   K+GS G ++  + V+ + +    LV   WN
Sbjct: 135 ISNLDLDSADEDSMKQVFDSVPDWLSEKLGSAGTILPWLPVSCDDVDSEMLVVDSWN 191


>At2g47680.1 68415.m05955 zinc finger (CCCH type) helicase family
           protein similar to SP|Q28141 ATP-dependent RNA helicase
           A (Nuclear DNA helicase II) (DEAD-box protein 9) {Bos
           taurus}; contains Pfam profiles PF00271: Helicase
           conserved C-terminal domain, PF00642: Zinc finger
           C-x8-C-x5-C-x3-H type (and similar)
          Length = 1015

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = -2

Query: 421 DGAQQHPLVFCKQNGFSGNACVISFSDHKLHFVSKISNKW 302
           DG+   PL+        G  C++ F D  +HF S I+N++
Sbjct: 799 DGSSTSPLLDLFPTSSEG--CILVFDDSDMHFTSSIANRY 836


>At4g11070.1 68417.m01798 WRKY family transcription factor other
           putative proteins, Arabidopsis thaliana
          Length = 313

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 15/45 (33%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
 Frame = -3

Query: 465 VSNSRLSILTIDGLSTEHNSTPSFSVNKMGSPGMLV-SLVSVTTN 334
           VS+ + +IL ++G +T+HN T   + + +  PG +  S  S+T N
Sbjct: 53  VSSFKKAILMLNGSTTQHNPTIELAPDPLAHPGKVPGSPASITGN 97


>At4g31370.1 68417.m04448 fasciclin-like arabinogalactan family
           protein similar to fasciclin-like
           arabinogalactan-protein 1 [Arabidopsis thaliana]
           gi|13377776|gb|AAK20857
          Length = 278

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 22/76 (28%), Positives = 40/76 (52%), Gaps = 5/76 (6%)
 Frame = +2

Query: 8   IKMKRVKC-NKVRTVTEIVNSDEKIQKTYELAEFDLKNLSS----LESYETLKIKLALSK 172
           IK K +   +K +T+T +  S++ I      +E +L+N+      L+ Y+ LK++  + +
Sbjct: 45  IKTKLIAAIDKYQTITVLAVSNDAISSITNRSEVELRNILMTHVILDYYDELKLQ-GMRE 103

Query: 173 YMAMLSTLEMTQPLLE 220
              ML+TL  T  L E
Sbjct: 104 KSIMLTTLYQTTGLGE 119


>At2g37930.1 68415.m04656 expressed protein
          Length = 467

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
 Frame = +2

Query: 287 HNRFHPLVTNFTNKMEFVVTETNDTSI-PGEPILF 388
           H   HP V     +M+ V T T+D+SI   E +LF
Sbjct: 270 HKNEHPFVHTIIGEMKTVTTFTSDSSIHKSETVLF 304


>At5g49555.1 68418.m06133 amine oxidase-related contains Pfam
           profile PF01593: amine oxidase, flavin-containing
          Length = 556

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
 Frame = -2

Query: 442 FNDRRSVDGAQQHPLVFCKQNGFS-GNACVISFSDHKLHFVSKISNKWMESIVYKS 278
           FND+ S    +      C +   S G+  +++F D  L   SK+ N W ES V K+
Sbjct: 163 FNDKLSNKMYKSAFWARCLRQAVSLGHKDMVAFMDLLLAPASKVLNNWFESDVLKA 218


>At2g19850.1 68415.m02321 hypothetical protein
          Length = 296

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 11/35 (31%), Positives = 18/35 (51%)
 Frame = +2

Query: 203 TQPLLEIFRNKADTRQIAAVVFSTLAFIHNRFHPL 307
           T P L  F +   +R    V ++ +A  H+ F+PL
Sbjct: 186 TSPKLRFFSHLVSSRSWCFVAYAIVAVFHDAFYPL 220


>At1g77580.2 68414.m09032 myosin heavy chain-related low similarity
           to SP|P08799 Myosin II heavy chain, non muscle
           {Dictyostelium discoideum}
          Length = 779

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 20/72 (27%), Positives = 34/72 (47%), Gaps = 1/72 (1%)
 Frame = +2

Query: 23  VKCNKVRTVTEIVNSDEKIQKTYELAEFDLKNLSSLES-YETLKIKLALSKYMAMLSTLE 199
           VKCN+   V  I NS+    +T EL E     L  LE+  E LK ++  ++  A++    
Sbjct: 373 VKCNREEAVVHIENSEVLTSRTKELEE----KLEKLEAEKEELKSEVKCNREKAVVHVEN 428

Query: 200 MTQPLLEIFRNK 235
                +E+  ++
Sbjct: 429 SLAAEIEVLTSR 440


>At1g77580.1 68414.m09033 myosin heavy chain-related low similarity
           to SP|P08799 Myosin II heavy chain, non muscle
           {Dictyostelium discoideum}
          Length = 629

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 20/72 (27%), Positives = 34/72 (47%), Gaps = 1/72 (1%)
 Frame = +2

Query: 23  VKCNKVRTVTEIVNSDEKIQKTYELAEFDLKNLSSLES-YETLKIKLALSKYMAMLSTLE 199
           VKCN+   V  I NS+    +T EL E     L  LE+  E LK ++  ++  A++    
Sbjct: 339 VKCNREEAVVHIENSEVLTSRTKELEE----KLEKLEAEKEELKSEVKCNREKAVVHVEN 394

Query: 200 MTQPLLEIFRNK 235
                +E+  ++
Sbjct: 395 SLAAEIEVLTSR 406


>At1g15340.1 68414.m01835 methyl-CpG-binding domain-containing
           protein contains Pfam profile PF01429: Methyl-CpG
           binding domain
          Length = 384

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 3/41 (7%)
 Frame = +2

Query: 449 SREFD---TEALVNFENDNCNVRIAKTFGASKRKNTTRSDD 562
           S+E+D   TEA  N END       KT  A+ ++N T+  D
Sbjct: 302 SKEYDEKTTEAEANKENDTQESDEKKTEAAANKENETQESD 342


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,218,866
Number of Sequences: 28952
Number of extensions: 238746
Number of successful extensions: 682
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 674
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 682
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1141585696
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)