Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc19f10
         (646 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ876407-1|CAI45288.1|  590|Tribolium castaneum phosphatase prot...    25   0.40 
S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Triboliu...    22   5.0  
U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse ...    21   8.7  

>AJ876407-1|CAI45288.1|  590|Tribolium castaneum phosphatase
           protein.
          Length = 590

 Score = 25.4 bits (53), Expect = 0.40
 Identities = 14/24 (58%), Positives = 16/24 (66%)
 Frame = -3

Query: 326 RLNRIQKLGFSA*ALGVWRIRSSV 255
           RLN I+KL   A ALGV R RS +
Sbjct: 30  RLNSIKKLSTIALALGVERTRSEL 53



 Score = 22.2 bits (45), Expect = 3.8
 Identities = 7/24 (29%), Positives = 13/24 (54%)
 Frame = -3

Query: 542 SNNNGFVCNKHNCGVYSICYTQTT 471
           S  + F      CG++S+CY + +
Sbjct: 138 SAGDWFTSRTSACGLFSVCYPRVS 161


>S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Tribolium
           castaneum homeodomainprotein mRNA, complete cds. ).
          Length = 327

 Score = 21.8 bits (44), Expect = 5.0
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = +3

Query: 96  RILDAIAETNTKVDSVQTQLNGLEESFQPLD 188
           RI D I     K  +V  ++ G+EE+  P+D
Sbjct: 143 RITDPINIRKCKPKTVVPEVGGVEEAKGPVD 173


>U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse
           transcriptase andRNase H protein.
          Length = 712

 Score = 21.0 bits (42), Expect = 8.7
 Identities = 9/37 (24%), Positives = 18/37 (48%)
 Frame = +3

Query: 21  FVY*LKSYTVNYILFTIMSKPNVLTRILDAIAETNTK 131
           F+Y  +SYT   + F + +     +R +D +  T  +
Sbjct: 415 FLYNGRSYTYQVLPFGLKTAVGSFSRAMDVVLGTEVR 451


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 135,450
Number of Sequences: 336
Number of extensions: 2899
Number of successful extensions: 10
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 16552695
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)