Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc19f10
         (646 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1861.03 |mak10||NatC N-acetyltransferase complex subunit Mak...    27   3.1  
SPACUNK4.13c |||GTPase Ylf2 |Schizosaccharomyces pombe|chr 1|||M...    27   3.1  
SPCC1235.08c |pdh1||DUF1751 family protein|Schizosaccharomyces p...    26   5.3  
SPAC17A2.06c |vps8||WD repeat protein Vps8|Schizosaccharomyces p...    25   7.1  
SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1 |Schizosacch...    25   7.1  

>SPBC1861.03 |mak10||NatC N-acetyltransferase complex subunit Mak10
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 708

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +3

Query: 450 TKNIKNMSCLCITNAVNATIV 512
           T  +KN+ C CITN V+  I+
Sbjct: 664 TNYLKNLLCCCITNLVSLAIL 684


>SPACUNK4.13c |||GTPase Ylf2 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 407

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 3/57 (5%)
 Frame = +3

Query: 60  LFTIMSKPNV---LTRILDAIAETNTKVDSVQTQLNGLEESFQPLDGLPAQLTDFNT 221
           LF I++K N+          I   + K   + +Q   L E +QP   +PAQLT ++T
Sbjct: 61  LFQILTKTNLGNPANYPFATIDPVHAKAPVLDSQYELLCEIYQPKTRIPAQLTIYDT 117


>SPCC1235.08c |pdh1||DUF1751 family protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 226

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 15/50 (30%), Positives = 26/50 (52%)
 Frame = -3

Query: 572 VYEQKKQQF*SNNNGFVCNKHNCGVYSICYTQTTHIFYIFRNLPNDYILL 423
           +Y  KK++   ++N F+C       Y I    + H+FY+F++ P  Y  L
Sbjct: 150 LYSCKKEE---SSNKFLCPLSK---YLIYLFLSIHLFYVFQSFPWTYFCL 193


>SPAC17A2.06c |vps8||WD repeat protein Vps8|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1272

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 11/33 (33%), Positives = 16/33 (48%)
 Frame = -3

Query: 374 LKKNDLFTWNCVYHDERLNRIQKLGFSA*ALGV 276
           L+   LFTW C  + E  N +      A +LG+
Sbjct: 523 LEVQHLFTWTCELYSENFNTVISSFIIANSLGI 555


>SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1327

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 14/44 (31%), Positives = 23/44 (52%)
 Frame = +3

Query: 117 ETNTKVDSVQTQLNGLEESFQPLDGLPAQLTDFNTKISEIQSIL 248
           E N ++ S   Q + + ESF     L    T+++  +S +QSIL
Sbjct: 371 ENNIQISSEYLQQHLIGESFDGNISLEPNSTEWDDDVSALQSIL 414


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,368,469
Number of Sequences: 5004
Number of extensions: 45377
Number of successful extensions: 115
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 115
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 289756512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)