Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc19f10
         (646 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_54597| Best HMM Match : zf-B_box (HMM E-Value=4e-17)                29   3.2  
SB_14715| Best HMM Match : Baculo_PEP_C (HMM E-Value=0.0024)           29   3.2  
SB_49607| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.7  
SB_29594| Best HMM Match : Pox_A_type_inc (HMM E-Value=8.4e-06)        28   7.5  
SB_13763| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.5  

>SB_54597| Best HMM Match : zf-B_box (HMM E-Value=4e-17)
          Length = 755

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 11/46 (23%), Positives = 29/46 (63%)
 Frame = -2

Query: 396 IKQLICYFKKKRFIYLELRLPRRASESNSKAWIFSVGFRSLEDPEQ 259
           +K L+ Y+K   F ++  ++  R  +S+S++++F++  ++   PE+
Sbjct: 338 LKTLVFYYKNNAFCFIFFKVSDRGYQSSSRSFLFTLCNKNGYRPEK 383


>SB_14715| Best HMM Match : Baculo_PEP_C (HMM E-Value=0.0024)
          Length = 2040

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 17/71 (23%), Positives = 38/71 (53%)
 Frame = +3

Query: 36  KSYTVNYILFTIMSKPNVLTRILDAIAETNTKVDSVQTQLNGLEESFQPLDGLPAQLTDF 215
           K + +N  +  + +K + L   ++ +   NTKV+   T++N L      L+   A++ D 
Sbjct: 359 KLHDLNTKVHDLNAKVHDLNTKVNDLNTKNTKVNDQNTKVNDLNTKVHDLN---AKVHDL 415

Query: 216 NTKISEIQSIL 248
           NTK+ ++ +++
Sbjct: 416 NTKVHDLNTMV 426


>SB_49607| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4538

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 13/26 (50%), Positives = 19/26 (73%), Gaps = 2/26 (7%)
 Frame = -2

Query: 378  YFKKKRF--IYLELRLPRRASESNSK 307
            Y +K+R   +Y+  RLP+RASE+N K
Sbjct: 1364 YRRKRRVNQVYVAQRLPKRASENNGK 1389


>SB_29594| Best HMM Match : Pox_A_type_inc (HMM E-Value=8.4e-06)
          Length = 1292

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 14/38 (36%), Positives = 22/38 (57%)
 Frame = +3

Query: 135 DSVQTQLNGLEESFQPLDGLPAQLTDFNTKISEIQSIL 248
           D +Q   + L ++   +D L AQL +   KISE+ S+L
Sbjct: 803 DEMQKASSELLDTKSTMDALRAQLVEKQNKISELDSLL 840


>SB_13763| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 319

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = -2

Query: 357 IYLELRLPRRASESNSKAWIFSV 289
           IY ++ L R+A + NS+AW  S+
Sbjct: 59  IYCDVELSRKAMQHNSRAWSISI 81


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,795,043
Number of Sequences: 59808
Number of extensions: 305316
Number of successful extensions: 636
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 573
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 635
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1633044375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)