Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc19f10
         (646 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006834-1|AAF40010.3| 8545|Caenorhabditis elegans Abnormal nucl...    28   4.9  
Z95559-7|CAB76730.2|  329|Caenorhabditis elegans Hypothetical pr...    28   6.5  
Z81044-12|CAB02811.2|  527|Caenorhabditis elegans Hypothetical p...    27   8.6  

>AC006834-1|AAF40010.3| 8545|Caenorhabditis elegans Abnormal nuclear
            anchorage protein1 protein.
          Length = 8545

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 19/54 (35%), Positives = 27/54 (50%)
 Frame = +3

Query: 51   NYILFTIMSKPNVLTRILDAIAETNTKVDSVQTQLNGLEESFQPLDGLPAQLTD 212
            N +L  I  K N L +  D IAET+ KV+ ++     +      LD LPA+  D
Sbjct: 2720 NKLLAKIDEKLNSLPK--DQIAETHRKVEDIKVTKADIVAQIDVLDKLPAKDID 2771


>Z95559-7|CAB76730.2|  329|Caenorhabditis elegans Hypothetical
           protein Y41E3.14 protein.
          Length = 329

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = +2

Query: 536 YLIKIVVFFVHRQYCVLPKRVLH 604
           YL   ++FF++  YCVL K++ H
Sbjct: 208 YLFVAIMFFLYITYCVLIKKLAH 230


>Z81044-12|CAB02811.2|  527|Caenorhabditis elegans Hypothetical
           protein C30H6.5 protein.
          Length = 527

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 13/41 (31%), Positives = 21/41 (51%)
 Frame = +2

Query: 485 NKCCKRHNCVCCKQTHYYLIKIVVFFVHRQYCVLPKRVLHK 607
           N+C ++  C+     H    K V++ V+ Q CVL K   H+
Sbjct: 104 NECLRK--CIQAPMNHKIKCKTVMYNVNTQNCVLSKYARHE 142


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,843,188
Number of Sequences: 27780
Number of extensions: 249685
Number of successful extensions: 594
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 565
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 594
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1423653030
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)