Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc19f10
         (646 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g78610.1 68414.m09161 mechanosensitive ion channel domain-con...    30   1.1  
At5g43500.2 68418.m05318 expressed protein                             29   3.5  
At5g43500.1 68418.m05319 expressed protein                             29   3.5  
At3g51110.1 68416.m05597 crooked neck protein, putative / cell c...    28   4.6  
At4g21640.1 68417.m03136 subtilase family protein similar to sub...    27   8.1  

>At1g78610.1 68414.m09161 mechanosensitive ion channel
           domain-containing protein / MS ion channel
           domain-containing protein contains Pfam profile PF00924:
           Mechanosensitive ion channel
          Length = 856

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 13/31 (41%), Positives = 22/31 (70%)
 Frame = +2

Query: 512 VCCKQTHYYLIKIVVFFVHRQYCVLPKRVLH 604
           +C +    +++KIVVFF+ R + +L KRVL+
Sbjct: 286 ICGRLVSSWIVKIVVFFIERNF-LLRKRVLY 315


>At5g43500.2 68418.m05318 expressed protein
          Length = 584

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 13/34 (38%), Positives = 22/34 (64%)
 Frame = -3

Query: 419 SQRIVRIL*NN*FVILKKNDLFTWNCVYHDERLN 318
           S+++ RI   N    +KK+ +FTW  VY DE+++
Sbjct: 102 SRKMGRIDGYNQASTIKKDSVFTWTDVYEDEKIS 135


>At5g43500.1 68418.m05319 expressed protein
          Length = 596

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 13/34 (38%), Positives = 22/34 (64%)
 Frame = -3

Query: 419 SQRIVRIL*NN*FVILKKNDLFTWNCVYHDERLN 318
           S+++ RI   N    +KK+ +FTW  VY DE+++
Sbjct: 114 SRKMGRIDGYNQASTIKKDSVFTWTDVYEDEKIS 147


>At3g51110.1 68416.m05597 crooked neck protein, putative / cell
           cycle protein, putative similar to Swiss-Prot:P17886
           crooked neck protein [Drosophila melanogaster]
          Length = 413

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 17/52 (32%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
 Frame = -2

Query: 294 SVGFRSLEDPEQCHRSIWIEFLRF*C*NRSIERANR--PKAGTILPARLTEF 145
           SV  R+LED    + ++W+++  F   N+S+  A     +A  ILP R+ +F
Sbjct: 92  SVWERALEDESYRNHTLWLKYAEFEMRNKSVNHARNVWDRAVKILP-RVDQF 142


>At4g21640.1 68417.m03136 subtilase family protein similar to
           subtilase SP1 [Oryza sativa] GI:9957714
          Length = 733

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 12/22 (54%), Positives = 16/22 (72%)
 Frame = -2

Query: 327 ASESNSKAWIFSVGFRSLEDPE 262
           AS+SNSK +I  +G R  +DPE
Sbjct: 34  ASDSNSKVYIVYLGQREHDDPE 55


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,798,349
Number of Sequences: 28952
Number of extensions: 218520
Number of successful extensions: 487
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 480
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 487
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1334473344
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)