Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc19f09
(399 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g18730.1 68416.m02378 tetratricopeptide repeat (TPR)-containi... 29 0.86
At3g02560.2 68416.m00247 40S ribosomal protein S7 (RPS7B) simila... 27 3.5
At3g02560.1 68416.m00246 40S ribosomal protein S7 (RPS7B) simila... 27 3.5
At1g08170.1 68414.m00902 histone H2B family protein similar to h... 27 3.5
At5g51540.1 68418.m06391 peptidase M3 family protein / thimet ol... 27 4.6
At4g27660.1 68417.m03978 expressed protein ; expression support... 27 4.6
At4g10890.1 68417.m01772 expressed protein 27 6.1
At3g11590.1 68416.m01416 expressed protein 27 6.1
At5g59910.1 68418.m07513 histone H2B nearly identical to histone... 26 8.0
At5g22880.1 68418.m02676 histone H2B, putative strong similarity... 26 8.0
At3g46030.1 68416.m04980 histone H2B, putative strong similarity... 26 8.0
At3g45980.1 68416.m04975 histone H2B identical to histone H2B Ar... 26 8.0
At3g09480.1 68416.m01127 histone H2B, putative similar to histon... 26 8.0
At2g28720.1 68415.m03491 histone H2B, putative strong similarity... 26 8.0
At1g65010.1 68414.m07368 expressed protein similar to endosome-a... 26 8.0
At1g07790.1 68414.m00843 histone H2B, putative strong similarity... 26 8.0
>At3g18730.1 68416.m02378 tetratricopeptide repeat (TPR)-containing
protein contains Pfam profile PF00515: TPR Domain
Length = 1311
Score = 29.5 bits (63), Expect = 0.86
Identities = 18/71 (25%), Positives = 40/71 (56%)
Frame = +1
Query: 46 VYPDKDFSLKLKRVINMFLNDEIENDKIYKLVETVDSSNKLSRRQVDFLIHALLNNVSVT 225
V D ++ ++ I + L+D+ E++ Y+L DSS+K+ R+ + ++ + ++
Sbjct: 583 VVADSQQTVAGRKRIRVILSDD-ESETEYELGCPKDSSHKVLRQNEEVSEESMYFDGAIN 641
Query: 226 FTLHRFVDDNV 258
+T +R + DNV
Sbjct: 642 YTDNRAIQDNV 652
>At3g02560.2 68416.m00247 40S ribosomal protein S7 (RPS7B) similar
to ribosomal protein S7 GB:AAD26256 from [Secale
cereale]
Length = 191
Score = 27.5 bits (58), Expect = 3.5
Identities = 12/36 (33%), Positives = 22/36 (61%)
Frame = +1
Query: 82 RVINMFLNDEIENDKIYKLVETVDSSNKLSRRQVDF 189
+++ +FL+ +++ND YKL V KL+ + V F
Sbjct: 149 KIMKVFLDSKLKNDTEYKLETMVGVYRKLTGKDVVF 184
>At3g02560.1 68416.m00246 40S ribosomal protein S7 (RPS7B) similar
to ribosomal protein S7 GB:AAD26256 from [Secale
cereale]
Length = 191
Score = 27.5 bits (58), Expect = 3.5
Identities = 12/36 (33%), Positives = 22/36 (61%)
Frame = +1
Query: 82 RVINMFLNDEIENDKIYKLVETVDSSNKLSRRQVDF 189
+++ +FL+ +++ND YKL V KL+ + V F
Sbjct: 149 KIMKVFLDSKLKNDTEYKLETMVGVYRKLTGKDVVF 184
>At1g08170.1 68414.m00902 histone H2B family protein similar to
histone H2B from Chlamydomonas reinhardtii [SP|P54347,
SP|P54346, SP|P50565], Volvox carteri [SP|P16867,
SP|P16868]; contains Pfam profile PF00125 Core histone
H2A/H2B/H3/H4
Length = 243
Score = 27.5 bits (58), Expect = 3.5
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +1
Query: 40 EQVYPDKDFSLKLKRVINMFLNDEIE 117
+QV+PD + K V+NMF+ D E
Sbjct: 160 KQVHPDLGITSKAMTVVNMFMGDMFE 185
>At5g51540.1 68418.m06391 peptidase M3 family protein / thimet
oligopeptidase family protein low similarity to
SP|Q99797 Mitochondrial intermediate peptidase,
mitochondrial precursor (EC 3.4.24.59) {Homo sapiens};
contains Pfam profile PF01432: Peptidase family M3
Length = 860
Score = 27.1 bits (57), Expect = 4.6
Identities = 14/60 (23%), Positives = 28/60 (46%), Gaps = 3/60 (5%)
Frame = +1
Query: 34 LCEQVYPDKDFSLKLKRV---INMFLNDEIENDKIYKLVETVDSSNKLSRRQVDFLIHAL 204
LC Q +PD++F + + +N +L+ N +Y V+ + + L ++ H L
Sbjct: 92 LCRQTHPDREFVEEANKAAIEMNDYLHHLNTNHTLYAAVKKAEQDSNLLTKEASRTAHHL 151
>At4g27660.1 68417.m03978 expressed protein ; expression supported
by MPSS
Length = 208
Score = 27.1 bits (57), Expect = 4.6
Identities = 11/21 (52%), Positives = 13/21 (61%), Gaps = 1/21 (4%)
Frame = -1
Query: 252 VVHESMQCKCYT-DIV*QCMY 193
+VHE QC CY D+V C Y
Sbjct: 94 IVHEKGQCYCYVCDVVAPCAY 114
>At4g10890.1 68417.m01772 expressed protein
Length = 527
Score = 26.6 bits (56), Expect = 6.1
Identities = 16/62 (25%), Positives = 29/62 (46%)
Frame = +1
Query: 76 LKRVINMFLNDEIENDKIYKLVETVDSSNKLSRRQVDFLIHALLNNVSVTFTLHRFVDDN 255
L+ + MFL + +N + +V S + +R++D ++ ALL + T D
Sbjct: 16 LEESVAMFLEEVDKNRTVRDIVARYQQSLNVVKRKIDDVLSALLKFAADTLKSQESHDTK 75
Query: 256 VL 261
VL
Sbjct: 76 VL 77
>At3g11590.1 68416.m01416 expressed protein
Length = 622
Score = 26.6 bits (56), Expect = 6.1
Identities = 22/85 (25%), Positives = 37/85 (43%), Gaps = 1/85 (1%)
Frame = +1
Query: 10 VKTTLSDWLCEQVYPDKDFSLKLKRVINMFLNDEIENDKIYKLVETVDSSNKLSRRQVDF 189
VKT L D C S +L ++IN + LV + S + +R QV+
Sbjct: 219 VKTRLKD--CSNALTT---SKELLKIINRMWGQDDRPSSSMSLVSALHSELERARLQVNQ 273
Query: 190 LIHA-LLNNVSVTFTLHRFVDDNVL 261
LIH N +++ + RF ++ +
Sbjct: 274 LIHEHKPENNDISYLMKRFAEEKAV 298
>At5g59910.1 68418.m07513 histone H2B nearly identical to histone
H2B Arabidopsis thaliana GI:2407802; contains Pfam
profile PF00125 Core histone H2A/H2B/H3/H4
Length = 150
Score = 26.2 bits (55), Expect = 8.0
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +1
Query: 40 EQVYPDKDFSLKLKRVINMFLNDEIE 117
+QV+PD S K ++N F+ND E
Sbjct: 72 KQVHPDIGISSKAMGIMNSFINDIFE 97
>At5g22880.1 68418.m02676 histone H2B, putative strong similarity to
histone H2B-3 Lycopersicon esculentum GI:3021485, H2B
Gossypium hirsutum SP|O22582; contains Pfam profile
PF00125 Core histone H2A/H2B/H3/H4
Length = 145
Score = 26.2 bits (55), Expect = 8.0
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +1
Query: 40 EQVYPDKDFSLKLKRVINMFLNDEIE 117
+QV+PD S K ++N F+ND E
Sbjct: 67 KQVHPDIGISSKAMGIMNSFINDIFE 92
>At3g46030.1 68416.m04980 histone H2B, putative strong similarity to
histone H2B Arabidopsis thaliana GI:2407802, Gossypium
hirsutum SP|O22582, Lycopersicon esculentum GI:3021489;
contains Pfam profile PF00125 Core histone H2A/H2B/H3/H4
Length = 145
Score = 26.2 bits (55), Expect = 8.0
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +1
Query: 40 EQVYPDKDFSLKLKRVINMFLNDEIE 117
+QV+PD S K ++N F+ND E
Sbjct: 67 KQVHPDIGISSKAMGIMNSFINDIFE 92
>At3g45980.1 68416.m04975 histone H2B identical to histone H2B
Arabidopsis thaliana GI:2407802; contains Pfam profile
PF00125 Core histone H2A/H2B/H3/H4
Length = 150
Score = 26.2 bits (55), Expect = 8.0
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +1
Query: 40 EQVYPDKDFSLKLKRVINMFLNDEIE 117
+QV+PD S K ++N F+ND E
Sbjct: 72 KQVHPDIGISSKAMGIMNSFINDIFE 97
>At3g09480.1 68416.m01127 histone H2B, putative similar to histone
from Arabidopsis thaliana GI:2407802, Gossypium hirsutum
SP|O22582, H2B-3 GB:CAA12231 from [Lycopersicon
esculentum]; contains Pfam profile PF00125 Core histone
H2A/H2B/H3/H4
Length = 126
Score = 26.2 bits (55), Expect = 8.0
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +1
Query: 40 EQVYPDKDFSLKLKRVINMFLNDEIE 117
+QV+PD S K ++N F+ND E
Sbjct: 48 KQVHPDIGISGKAMGIMNSFINDTFE 73
>At2g28720.1 68415.m03491 histone H2B, putative strong similarity to
histone H2B Arabidopsis thaliana GI:2407802, Gossypium
hirsutum SP|O22582; contains Pfam profile PF00125 Core
histone H2A/H2B/H3/H4
Length = 151
Score = 26.2 bits (55), Expect = 8.0
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +1
Query: 40 EQVYPDKDFSLKLKRVINMFLNDEIE 117
+QV+PD S K ++N F+ND E
Sbjct: 73 KQVHPDIGISSKAMGIMNSFINDIFE 98
>At1g65010.1 68414.m07368 expressed protein similar to
endosome-associated protein (GI:1016368) [Homo sapiens];
similar to Centromeric protein E (CENP-E protein)
(Swiss-Prot:Q02224) [Homo sapiens]
Length = 1318
Score = 26.2 bits (55), Expect = 8.0
Identities = 20/97 (20%), Positives = 47/97 (48%), Gaps = 2/97 (2%)
Frame = +1
Query: 1 VSVVKTTLSDW--LCEQVYPDKDFSLKLKRVINMFLNDEIENDKIYKLVETVDSSNKLSR 174
VS+++++L + L EQ+ D + + + N + +E +N K+++L + V+ SN+
Sbjct: 247 VSILESSLKEQEGLVEQLKVDLEAAKMAESCTNSSV-EEWKN-KVHELEKEVEESNRSKS 304
Query: 175 RQVDFLIHALLNNVSVTFTLHRFVDDNVLTQDELSFL 285
+ + + + LH DN ++++ L
Sbjct: 305 SASESMESVMKQLAELNHVLHETKSDNAAQKEKIELL 341
>At1g07790.1 68414.m00843 histone H2B, putative strong similarity to
histone H2B Arabidopsis thaliana GI:2407802, Gossypium
hirsutum SP|O22582, Lycopersicon esculentum GI:3021489,
Capsicum annuum SP|O49118; contains Pfam profile PF00125
Core histone H2A/H2B/H3/H4
Length = 148
Score = 26.2 bits (55), Expect = 8.0
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +1
Query: 40 EQVYPDKDFSLKLKRVINMFLNDEIE 117
+QV+PD S K ++N F+ND E
Sbjct: 70 KQVHPDIGISSKAMGIMNSFINDIFE 95
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,733,163
Number of Sequences: 28952
Number of extensions: 105277
Number of successful extensions: 365
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 360
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 365
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 575830496
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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