Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc19f07
         (514 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC550.06c |hsp10||mitochondrial heat shock protein Hsp10|Schiz...    96   3e-21
SPBC1718.04 |||glycerol-3-phosphate O-acyltransferase |Schizosac...    31   0.13 
SPAC9G1.10c |||inositol polyphosphate phosphatase |Schizosacchar...    27   1.2  
SPAP27G11.04c |||tRNA specific adenosine deaminase subunit Tad3 ...    25   5.0  
SPAC959.09c |apc5|SPAP32A8.01c|anaphase-promoting complex subuni...    25   6.7  
SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyce...    25   6.7  
SPBPB2B2.12c |||UDP-glucose 4-epimerase|Schizosaccharomyces pomb...    25   6.7  

>SPCC550.06c |hsp10||mitochondrial heat shock protein
           Hsp10|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 104

 Score = 95.9 bits (228), Expect = 3e-21
 Identities = 45/99 (45%), Positives = 68/99 (68%)
 Frame = +3

Query: 48  AVKRLVPLLDRVLIKRAEAITKTAGGIVIPEKAQSKVLHGEVVAVGPGARKENGDFIPVQ 227
           + K +VPLLDR+L++R +A TKTA GI +PEK+  K+  G V++VG G   + G      
Sbjct: 7   SAKSIVPLLDRILVQRIKADTKTASGIFLPEKSVEKLSEGRVISVGKGGYNKEGKLAQPS 66

Query: 228 VSVGDKVLLPEYGGTKVSLENDEKEYHLFRESDILAKIE 344
           V+VGD+VLLP YGG+ + +   E+EY L+R+ ++LA I+
Sbjct: 67  VAVGDRVLLPAYGGSNIKV--GEEEYSLYRDHELLAIIK 103


>SPBC1718.04 |||glycerol-3-phosphate O-acyltransferase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 675

 Score = 30.7 bits (66), Expect = 0.13
 Identities = 25/78 (32%), Positives = 38/78 (48%), Gaps = 6/78 (7%)
 Frame = +3

Query: 90  KRAEAITKTAGGIVIPEKAQSKVLHGE----VVAVGPGARKENGDFIPVQVSVGDKVLLP 257
           +R   +   A G +  E+AQ   + GE    VVA G        D +  + SVGD +LLP
Sbjct: 79  QRFIGLMSRAFGAIPVERAQDLAIRGEGKIFVVAEGDKTAIHGKDTLFTKHSVGDTLLLP 138

Query: 258 -EYGGTKV-SLENDEKEY 305
             YG + + S+++D   Y
Sbjct: 139 NNYGSSHIASIKSDTLLY 156


>SPAC9G1.10c |||inositol polyphosphate phosphatase
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1191

 Score = 27.5 bits (58), Expect = 1.2
 Identities = 22/70 (31%), Positives = 36/70 (51%)
 Frame = +3

Query: 264  GGTKVSLENDEKEYHLFRESDILAKIEN*MMVALTCDSNSVSLVVACANETLIWSCIFCE 443
            GG+  S  N   +Y L+RE     K+E+ MM      SN    V+ C N   ++SC+F +
Sbjct: 857  GGSSNSA-NISSQYRLWRE-----KLESEMM---RVSSNDDYQVLVCENLVGLFSCVFVK 907

Query: 444  VLILSQLQYL 473
              + S+++ L
Sbjct: 908  NKLQSKIRML 917


>SPAP27G11.04c |||tRNA specific adenosine deaminase subunit Tad3
          |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 315

 Score = 25.4 bits (53), Expect = 5.0
 Identities = 8/29 (27%), Positives = 18/29 (62%)
 Frame = -2

Query: 87 SGHGPEEEPIVLLHWPFRFLINRIQKRRI 1
          S + P+E  +  L WPF+ + + ++ R++
Sbjct: 7  SKNSPKEATVPELDWPFKLIKSHLETRKL 35


>SPAC959.09c |apc5|SPAP32A8.01c|anaphase-promoting complex subunit
           Apc5 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 737

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 10/47 (21%), Positives = 26/47 (55%)
 Frame = -1

Query: 418 NVSFAHATTKLTELESHVKATIIQFSIFASMSDSLKR*YSFSSFSRL 278
           N S     T++ ++ SH+ ++I ++S+++ + + L   +SF     +
Sbjct: 62  NDSQPQTLTRIHDITSHLPSSIEEYSVYSLLHERLWSLHSFEDIHEI 108


>SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1610

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +2

Query: 17  ILLIKNRNGQCSKTIGSSSGPC 82
           +L +KNRN Q    + S  GPC
Sbjct: 507 VLYLKNRNFQTGNEVMSILGPC 528


>SPBPB2B2.12c |||UDP-glucose 4-epimerase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 713

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 18/67 (26%), Positives = 29/67 (43%)
 Frame = +3

Query: 108 TKTAGGIVIPEKAQSKVLHGEVVAVGPGARKENGDFIPVQVSVGDKVLLPEYGGTKVSLE 287
           T T   ++   + ++ V        G   R +N   IP+  S  +    P YG TK ++E
Sbjct: 109 TITLLNVMREHRVKTVVFSSSATVYGDATRFDN--MIPIPESCPNDPTNP-YGKTKYAIE 165

Query: 288 NDEKEYH 308
           N  K+ H
Sbjct: 166 NIIKDLH 172


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,791,039
Number of Sequences: 5004
Number of extensions: 33984
Number of successful extensions: 107
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 106
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 206265012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)