Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc19f07
         (514 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1454 + 26652397-26652501,26653014-26653156,26654013-26654061     97   1e-20
02_05_0964 - 33133516-33133689,33133780-33133857,33133997-331341...    77   1e-14
09_04_0259 - 16182190-16182360,16183185-16183262,16184431-161845...    75   3e-14
06_01_0676 + 4945361-4945531,4945632-4945811,4947145-4947300,494...    75   3e-14
03_03_0057 - 14132854-14133012,14133724-14133837,14134306-14134413     58   3e-09
10_08_0968 + 21933627-21933785,21933893-21933943,21934094-219341...    41   7e-04
12_01_0618 - 5099021-5099668,5099701-5100221,5100311-5100352,510...    29   2.2  
12_01_0321 + 2447726-2447790,2448114-2448320,2449259-2449392,244...    29   2.9  
06_01_0922 - 7113781-7113942,7114093-7114235,7115305-7115506,711...    28   3.8  
01_01_0892 + 7037384-7037795,7038447-7038962,7039507-7039593,703...    28   3.8  
03_03_0251 - 15849211-15851457                                         28   5.1  
05_04_0335 - 20354678-20354686,20354819-20355662,20355739-20356217     27   6.7  
11_06_0631 - 25656885-25657000,25658591-25658658,25658957-256589...    27   8.8  
08_02_0041 + 11531010-11531366,11531409-11531657                       27   8.8  
03_05_0582 + 25823862-25824459,25824915-25825063,25825691-258259...    27   8.8  

>07_03_1454 + 26652397-26652501,26653014-26653156,26654013-26654061
          Length = 98

 Score = 96.7 bits (230), Expect = 1e-20
 Identities = 50/96 (52%), Positives = 69/96 (71%)
 Frame = +3

Query: 54  KRLVPLLDRVLIKRAEAITKTAGGIVIPEKAQSKVLHGEVVAVGPGARKENGDFIPVQVS 233
           +RL+P L+RVL+++     K+AGGI++PE ++ ++  G+VVAVGPG R ++G  IPV + 
Sbjct: 3   RRLIPSLNRVLVEKLVQPKKSAGGILLPETSK-QLNSGKVVAVGPGERDKDGKLIPVALK 61

Query: 234 VGDKVLLPEYGGTKVSLENDEKEYHLFRESDILAKI 341
            GD VLLPEYGG +V L   EKEY LFRE DIL  +
Sbjct: 62  EGDTVLLPEYGGLEVKLA-AEKEYLLFREHDILGTL 96


>02_05_0964 -
           33133516-33133689,33133780-33133857,33133997-33134152,
           33134685-33134864,33135516-33135695
          Length = 255

 Score = 76.6 bits (180), Expect = 1e-14
 Identities = 43/94 (45%), Positives = 56/94 (59%)
 Frame = +3

Query: 54  KRLVPLLDRVLIKRAEAITKTAGGIVIPEKAQSKVLHGEVVAVGPGARKENGDFIPVQVS 233
           K + PL DRVLIK AEA  KT GG+++ E  + K   G VVAVGPG   E G  IP+ VS
Sbjct: 160 KDMKPLSDRVLIKVAEAEDKTPGGLLLTETTKEKPSIGTVVAVGPGPLDEEGKRIPLSVS 219

Query: 234 VGDKVLLPEYGGTKVSLENDEKEYHLFRESDILA 335
            G  VL  +Y G++    +D   Y + R SD++A
Sbjct: 220 AGSTVLYSKYAGSEFK-GSDGTSYIVLRVSDLMA 252



 Score = 73.3 bits (172), Expect = 1e-13
 Identities = 40/95 (42%), Positives = 58/95 (61%)
 Frame = +3

Query: 60  LVPLLDRVLIKRAEAITKTAGGIVIPEKAQSKVLHGEVVAVGPGARKENGDFIPVQVSVG 239
           L PL DRVL+K   A  KT GGI++P  AQSK   GEVVA+G G R    + + V + VG
Sbjct: 64  LKPLADRVLVKIKSAEQKTTGGILLPSAAQSKPQGGEVVAIGEG-RTVGDNKVEVSIQVG 122

Query: 240 DKVLLPEYGGTKVSLENDEKEYHLFRESDILAKIE 344
            +V+  +Y GT+V L  ++  + + +E DI+  +E
Sbjct: 123 SQVVYSKYAGTEVEL--NDSNHLILKEDDIIGILE 155


>09_04_0259 -
           16182190-16182360,16183185-16183262,16184431-16184586,
           16184913-16185092,16185875-16186027
          Length = 245

 Score = 74.9 bits (176), Expect = 3e-14
 Identities = 40/95 (42%), Positives = 60/95 (63%)
 Frame = +3

Query: 51  VKRLVPLLDRVLIKRAEAITKTAGGIVIPEKAQSKVLHGEVVAVGPGARKENGDFIPVQV 230
           VK L PL DRVLIK AEA  KTAGG+++ +  + K   G V AVGPG   E+G   P+ +
Sbjct: 150 VKDLKPLNDRVLIKVAEAEEKTAGGLLLTQATKEKPSIGTVTAVGPGPLVEDGSRKPLSI 209

Query: 231 SVGDKVLLPEYGGTKVSLENDEKEYHLFRESDILA 335
           + G+ V+  +Y G++   + ++ EY + R SD++A
Sbjct: 210 TPGNTVMYSKYAGSE--FKGEDGEYIVLRVSDVMA 242



 Score = 69.7 bits (163), Expect = 1e-12
 Identities = 45/116 (38%), Positives = 66/116 (56%)
 Frame = +3

Query: 66  PLLDRVLIKRAEAITKTAGGIVIPEKAQSKVLHGEVVAVGPGARKENGDFIPVQVSVGDK 245
           PL DRVL+K   +  KT GGI++P   QSK   G+VVAVG G R    D I + V VG +
Sbjct: 57  PLGDRVLVKIKTSDDKTVGGILLPTSVQSKPQGGQVVAVGEG-RSMGSDSIEISVPVGAQ 115

Query: 246 VLLPEYGGTKVSLENDEKEYHLFRESDILAKIEN*MMVALTCDSNSVSLVVACANE 413
           V+  +Y GT+  LE D  ++ + +E DI+  ++   +  L   ++ V + VA A E
Sbjct: 116 VVYSKYAGTE--LEFDGSDHLILKEDDIIGILDTDDVKDLKPLNDRVLIKVAEAEE 169


>06_01_0676 +
           4945361-4945531,4945632-4945811,4947145-4947300,
           4947460-4947537,4964041-4964214
          Length = 252

 Score = 74.9 bits (176), Expect = 3e-14
 Identities = 42/95 (44%), Positives = 56/95 (58%)
 Frame = +3

Query: 51  VKRLVPLLDRVLIKRAEAITKTAGGIVIPEKAQSKVLHGEVVAVGPGARKENGDFIPVQV 230
           VK + PL DRVLIK AEA  KTAGG+++ E  + K   G VVAVGPG   + G   P+ V
Sbjct: 156 VKDMKPLNDRVLIKVAEAEDKTAGGLILTETTKEKPSIGTVVAVGPGPLDDEGKRQPLSV 215

Query: 231 SVGDKVLLPEYGGTKVSLENDEKEYHLFRESDILA 335
           S G  V+  +Y G++     D   Y + R SD++A
Sbjct: 216 SAGSTVMYSKYAGSEFK-GADGTNYIVLRVSDVMA 249



 Score = 70.1 bits (164), Expect = 1e-12
 Identities = 42/95 (44%), Positives = 57/95 (60%)
 Frame = +3

Query: 60  LVPLLDRVLIKRAEAITKTAGGIVIPEKAQSKVLHGEVVAVGPGARKENGDFIPVQVSVG 239
           L PL DRVL+K   A  KT GGI++P  AQSK   GEVVAVG G R      + V + +G
Sbjct: 61  LKPLGDRVLVKLGAAEEKTVGGILLPSTAQSKPQGGEVVAVGEG-RTIGDKKVEVSLQIG 119

Query: 240 DKVLLPEYGGTKVSLENDEKEYHLFRESDILAKIE 344
            +V+  +Y GT+V   ND K + + +E DI+  +E
Sbjct: 120 AEVVYSKYAGTEVQF-NDTK-HLILKEDDIIGVLE 152


>03_03_0057 - 14132854-14133012,14133724-14133837,14134306-14134413
          Length = 126

 Score = 58.4 bits (135), Expect = 3e-09
 Identities = 29/46 (63%), Positives = 33/46 (71%)
 Frame = +3

Query: 168 EVVAVGPGARKENGDFIPVQVSVGDKVLLPEYGGTKVSLENDEKEY 305
           +VVAVGPG R  +G  IPV +  GD VLLPEYGGT+V L   EKEY
Sbjct: 79  KVVAVGPGERDRDGKLIPVSLKEGDTVLLPEYGGTEVKLA--EKEY 122



 Score = 37.1 bits (82), Expect = 0.008
 Identities = 20/70 (28%), Positives = 34/70 (48%)
 Frame = +3

Query: 48  AVKRLVPLLDRVLIKRAEAITKTAGGIVIPEKAQSKVLHGEVVAVGPGARKENGDFIPVQ 227
           A +RL+P ++RVL+++     K+AGGI++PE  +       V          N   +P +
Sbjct: 2   AARRLIPSMNRVLVEKLLQPNKSAGGILLPETTKQSFEDRNVFLFRITRNDGNNSPVPYK 61

Query: 228 VSVGDKVLLP 257
           +     V LP
Sbjct: 62  IENKKPVSLP 71


>10_08_0968 +
           21933627-21933785,21933893-21933943,21934094-21934129,
           21935011-21935076,21935163-21935210,21936424-21936453,
           21936651-21936719
          Length = 152

 Score = 40.7 bits (91), Expect = 7e-04
 Identities = 29/81 (35%), Positives = 43/81 (53%), Gaps = 3/81 (3%)
 Frame = +3

Query: 111 KTAGGIVIPEKAQS--KVLHGEVVAVGPGARKENGDFIPVQVSVGDKVLLPEYGGTKVSL 284
           K+ GG+++P+ A    + L GE+++VG             +V  G KVL  +    +V L
Sbjct: 83  KSVGGVLLPKSAVKFERYLMGEILSVGADVN---------EVEAGKKVLFSDINAYEVDL 133

Query: 285 ENDEKEYHLF-RESDILAKIE 344
             DEK  H F RESD+LA +E
Sbjct: 134 GTDEK--HCFCRESDLLAVVE 152


>12_01_0618 -
           5099021-5099668,5099701-5100221,5100311-5100352,
           5100905-5100962
          Length = 422

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 12/19 (63%), Positives = 16/19 (84%)
 Frame = +2

Query: 29  KNRNGQCSKTIGSSSGPCP 85
           K++N +C KT+ SSSGPCP
Sbjct: 236 KDKN-ECLKTMRSSSGPCP 253


>12_01_0321 +
           2447726-2447790,2448114-2448320,2449259-2449392,
           2449481-2449668,2450204-2450359
          Length = 249

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = -1

Query: 283 RLTLVPPYSGRRTLSPTLT*TGMKSPFSFRAPGPT 179
           R  +V PY+ RR++ P +  +G+K P  +    PT
Sbjct: 91  RFLIVSPYAARRSIMPKIKTSGVKYPDGWELIEPT 125


>06_01_0922 -
           7113781-7113942,7114093-7114235,7115305-7115506,
           7115590-7115685,7117053-7117139,7117237-7117638
          Length = 363

 Score = 28.3 bits (60), Expect = 3.8
 Identities = 14/34 (41%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
 Frame = +3

Query: 159 LHGEVVAVGPGARKENGDF-IPVQVSVGDKVLLP 257
           +HGEVV V PG  +   D+   V V VG ++++P
Sbjct: 78  VHGEVVQVTPGGEEHCYDYDYDVDVPVGAELVMP 111


>01_01_0892 +
           7037384-7037795,7038447-7038962,7039507-7039593,
           7039698-7039768,7040148-7040224,7040380-7040527,
           7040973-7041134,7041374-7041694
          Length = 597

 Score = 28.3 bits (60), Expect = 3.8
 Identities = 22/69 (31%), Positives = 31/69 (44%), Gaps = 5/69 (7%)
 Frame = -1

Query: 277 TLVPPYSGRRTLSPTLT*TGMKSPFSFR---APGPTATT--SPCKTLD*AFSGMTMPPAV 113
           T  PP +   + SP     G  SP S     AP P +TT  SP      + SG+T P  V
Sbjct: 22  TAAPPPASNNSSSPPAP--GSLSPPSLTPPAAPSPPSTTPSSPAAAAAASSSGLTTPVVV 79

Query: 112 LVIASALLI 86
            ++   L++
Sbjct: 80  GIVVGGLVV 88


>03_03_0251 - 15849211-15851457
          Length = 748

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 22/87 (25%), Positives = 38/87 (43%), Gaps = 1/87 (1%)
 Frame = +3

Query: 78  RVLIKRAEAITKTAGGIVIPEKAQSKVLH-GEVVAVGPGARKENGDFIPVQVSVGDKVLL 254
           R L++R + + KT G   I  K    V + G  + + P   +   + + +   +     +
Sbjct: 600 RSLVRR-QNLQKTPGWSSIEVKRSVNVFYSGNQMNIHPQHEEIQRELLDLLAKIRSLGYV 658

Query: 255 PEYGGTKVSLENDEKEYHLFRESDILA 335
           P+Y      +E DEKE  L   S+ LA
Sbjct: 659 PDYSFVLQDVEEDEKEQILNNHSERLA 685


>05_04_0335 - 20354678-20354686,20354819-20355662,20355739-20356217
          Length = 443

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = +3

Query: 252 LPEYGGTKVSLENDEKEYHLFRESDILA 335
           +P+       LE +EKE+HLF  S+ LA
Sbjct: 393 VPDTSSVMHDLEENEKEHHLFLHSERLA 420


>11_06_0631 -
           25656885-25657000,25658591-25658658,25658957-25658996,
           25659742-25659820,25659918-25661707,25662030-25662037,
           25662305-25662367,25662504-25662820
          Length = 826

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = +3

Query: 252 LPEYGGTKVSLENDEKEYHLFRESDILA 335
           +P+       LE  EKE+HLF  S+ LA
Sbjct: 678 VPDTSSVMHDLEESEKEHHLFLHSERLA 705


>08_02_0041 + 11531010-11531366,11531409-11531657
          Length = 201

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = +2

Query: 110 QNCRRHCHPREGSIQG 157
           +N RRH HPR G++ G
Sbjct: 117 RNMRRHVHPRRGAVLG 132


>03_05_0582 +
           25823862-25824459,25824915-25825063,25825691-25825960,
           25826031-25826161,25826545-25826662,25826737-25826829,
           25826987-25827064,25827158-25827224,25828780-25829111
          Length = 611

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 13/43 (30%), Positives = 21/43 (48%)
 Frame = -1

Query: 280 LTLVPPYSGRRTLSPTLT*TGMKSPFSFRAPGPTATTSPCKTL 152
           ++ +PP S     SP    T M+ P     P P++  SP ++L
Sbjct: 36  MSTMPPSSSAPCGSPACGGTSMEEPSREELPAPSSRASPSQSL 78


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,311,734
Number of Sequences: 37544
Number of extensions: 216221
Number of successful extensions: 665
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 645
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 662
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1106928780
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)