Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc19f07
         (514 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_58681| Best HMM Match : MAP65_ASE1 (HMM E-Value=3.3e-26)            31   0.74 
SB_12997| Best HMM Match : DSL (HMM E-Value=1.4013e-45)                29   1.7  
SB_55936| Best HMM Match : Paramecium_SA (HMM E-Value=0.56)            29   3.0  
SB_26814| Best HMM Match : 7tm_1 (HMM E-Value=0)                       28   3.9  
SB_44362| Best HMM Match : Transposase_24 (HMM E-Value=6.3)            28   5.2  
SB_18544| Best HMM Match : 7tm_1 (HMM E-Value=0.00082)                 28   5.2  
SB_42787| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.9  
SB_3417| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   9.1  

>SB_58681| Best HMM Match : MAP65_ASE1 (HMM E-Value=3.3e-26)
          Length = 631

 Score = 30.7 bits (66), Expect = 0.74
 Identities = 20/72 (27%), Positives = 33/72 (45%), Gaps = 2/72 (2%)
 Frame = +3

Query: 27  LKIEMANAVKRLVPLLD--RVLIKRAEAITKTAGGIVIPEKAQSKVLHGEVVAVGPGARK 200
           LK+E    +K L  L D  R L  R    +   G +V+P K Q + L   +  +    +K
Sbjct: 57  LKMEKHERIKVLKVLRDTERQLCDRLRLPSHNIGDVVVPNKEQMRELEANIDYLQKQLQK 116

Query: 201 ENGDFIPVQVSV 236
              +FI ++ S+
Sbjct: 117 RTDEFIRMKASI 128


>SB_12997| Best HMM Match : DSL (HMM E-Value=1.4013e-45)
          Length = 239

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = +2

Query: 104 YNQNCRRHCHPREGSIQGFTRRSSSGR 184
           Y  +CR HC P E  +QG      +GR
Sbjct: 167 YGDDCRIHCVPTESDVQGHYSCDGAGR 193


>SB_55936| Best HMM Match : Paramecium_SA (HMM E-Value=0.56)
          Length = 581

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = -1

Query: 196 RAPGPTATTSPCKTLD*AFSGMTMPPA 116
           R P P  + +PCKT+  +FS +   P+
Sbjct: 179 RTPSPLLSATPCKTITQSFSNVAFSPS 205


>SB_26814| Best HMM Match : 7tm_1 (HMM E-Value=0)
          Length = 594

 Score = 28.3 bits (60), Expect = 3.9
 Identities = 10/12 (83%), Positives = 12/12 (100%)
 Frame = -2

Query: 60  IVLLHWPFRFLI 25
           IVLLHWP+RFL+
Sbjct: 177 IVLLHWPWRFLL 188


>SB_44362| Best HMM Match : Transposase_24 (HMM E-Value=6.3)
          Length = 306

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = +3

Query: 198 KENGDFIPVQVSVGDKVLLPEYGGTKVSLEN 290
           +E G  +P+++   D+ L P  GG+ V + N
Sbjct: 31  REGGSIVPIRIPYLDEALSPREGGSIVPIRN 61



 Score = 27.1 bits (57), Expect = 9.1
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = +3

Query: 198 KENGDFIPVQVSVGDKVLLPEYGGTKVSL 284
           +E G  +P+++   DK L P  GG+ V +
Sbjct: 11  REGGSIVPIRIPYLDKALSPREGGSIVPI 39


>SB_18544| Best HMM Match : 7tm_1 (HMM E-Value=0.00082)
          Length = 370

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 11/44 (25%), Positives = 21/44 (47%)
 Frame = -3

Query: 386 NRIRITC*SYHHSVFNFRQYVRLSEEMIFFLIIFKAYFSTAVFW 255
           NR  + C  YH ++ N  +Y+ +     + +I+     + AV W
Sbjct: 97  NRAFVVCSLYHVTLLNIDRYIAIKNTFHYPVIVTNQRITIAVVW 140


>SB_42787| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 183

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 22/80 (27%), Positives = 38/80 (47%), Gaps = 1/80 (1%)
 Frame = +3

Query: 87  IKRAEAITKTAGGIVIPEKA-QSKVLHGEVVAVGPGARKENGDFIPVQVSVGDKVLLPEY 263
           IK  +AI +    +   EK  Q   L  +V+A      K++   +  Q+S  +K ++ + 
Sbjct: 44  IKTGKAIQQQQSEVEDLEKQLQDLQLSAQVLAEQRDNDKDHLQMLEQQISRENKDIMDKE 103

Query: 264 GGTKVSLENDEKEYHLFRES 323
              K  LE+ +K   LFR+S
Sbjct: 104 EAAKAKLEHFQKGSELFRKS 123


>SB_3417| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 332

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = -1

Query: 448 NTSQKIHDHINVSFAHATTKLTELESHVKATII 350
           N   +IH+HI V+ AH    +T   +H+  T I
Sbjct: 18  NMVTRIHNHIMVTRAHNHIMVTRAHNHIMVTRI 50


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,072,333
Number of Sequences: 59808
Number of extensions: 256391
Number of successful extensions: 801
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 716
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 795
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1136110413
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)