Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc19f07
         (514 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC084153-5|AAK84584.1|  108|Caenorhabditis elegans Hypothetical ...   113   9e-26
AF040646-1|AAK31537.1|  530|Caenorhabditis elegans Collagen prot...    31   0.64 
AF036705-10|AAB95167.2|  612|Caenorhabditis elegans Hypothetical...    29   1.5  
Z77670-1|CAB01247.1|  484|Caenorhabditis elegans Hypothetical pr...    29   2.0  
Z75525-7|CAH10769.1|  573|Caenorhabditis elegans Hypothetical pr...    28   3.4  
Z75525-6|CAA99765.2|  623|Caenorhabditis elegans Hypothetical pr...    28   3.4  
AF003925-1|AAB61344.1|  573|Caenorhabditis elegans mRNA capping ...    28   3.4  
AY077615-1|AAL79359.1|  510|Caenorhabditis elegans KSR-2b protein.     28   4.5  
AY077614-1|AAL79358.1|  550|Caenorhabditis elegans KSR-2a protein.     28   4.5  
AL137227-5|CAB70240.2|  510|Caenorhabditis elegans Hypothetical ...    28   4.5  
AL137227-4|CAB70239.2|  550|Caenorhabditis elegans Hypothetical ...    28   4.5  
Z70034-14|CAC44294.1|  356|Caenorhabditis elegans Hypothetical p...    27   6.0  
Z70034-13|CAC44293.1|  350|Caenorhabditis elegans Hypothetical p...    27   6.0  
Z49910-11|CAC44292.1|  356|Caenorhabditis elegans Hypothetical p...    27   6.0  
Z49910-10|CAC44291.1|  350|Caenorhabditis elegans Hypothetical p...    27   6.0  
Z92804-2|CAB07253.2|  321|Caenorhabditis elegans Hypothetical pr...    27   7.9  
Z69383-4|CAA93411.2|  326|Caenorhabditis elegans Hypothetical pr...    27   7.9  
AF125459-6|AAN60503.1|  219|Caenorhabditis elegans Hypothetical ...    27   7.9  
AF125459-5|AAD12844.1|  345|Caenorhabditis elegans Hypothetical ...    27   7.9  

>AC084153-5|AAK84584.1|  108|Caenorhabditis elegans Hypothetical
           protein Y22D7AL.10 protein.
          Length = 108

 Score =  113 bits (271), Expect = 9e-26
 Identities = 54/97 (55%), Positives = 70/97 (72%)
 Frame = +3

Query: 42  ANAVKRLVPLLDRVLIKRAEAITKTAGGIVIPEKAQSKVLHGEVVAVGPGARKENGDFIP 221
           +N +K   PL DRVL++R  A TKT GGI++PEK+Q KVL   VV+ G G R E G+ + 
Sbjct: 10  SNVLKTFKPLYDRVLVERVAAETKTKGGIMLPEKSQGKVLEATVVSAGAGLRNEKGELVA 69

Query: 222 VQVSVGDKVLLPEYGGTKVSLENDEKEYHLFRESDIL 332
           + V  GD+VLLPEYGGTKV +E  +KEY +FRESD+L
Sbjct: 70  LTVKPGDRVLLPEYGGTKVVVE--DKEYSIFRESDLL 104


>AF040646-1|AAK31537.1|  530|Caenorhabditis elegans Collagen protein
           70 protein.
          Length = 530

 Score = 30.7 bits (66), Expect = 0.64
 Identities = 17/53 (32%), Positives = 21/53 (39%)
 Frame = -1

Query: 271 VPPYSGRRTLSPTLT*TGMKSPFSFRAPGPTATTSPCKTLD*AFSGMTMPPAV 113
           VPPYSG RT+ P         P +   P P  T     T     +   +PP V
Sbjct: 257 VPPYSGYRTIPPVYNHYETVPPAAQTTPQPPCTPRTTTTTTTTTTTTALPPCV 309


>AF036705-10|AAB95167.2|  612|Caenorhabditis elegans Hypothetical
           protein F37C4.1 protein.
          Length = 612

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 14/46 (30%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
 Frame = -3

Query: 341 NFRQ-YVRLSEEMIFFLIIFKAYFSTAVFWKKNFITHTNLNGDEVS 207
           NF + Y+RLS   I  L++   + +  V  K   + H N +G ++S
Sbjct: 288 NFEKWYLRLSSTSIGLLVVALFFINIVVINKDQILDHVNFSGKDIS 333


>Z77670-1|CAB01247.1|  484|Caenorhabditis elegans Hypothetical
           protein W05E10.1 protein.
          Length = 484

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 15/32 (46%), Positives = 19/32 (59%)
 Frame = -3

Query: 344 FNFRQYVRLSEEMIFFLIIFKAYFSTAVFWKK 249
           FN   Y  +S EM+ FLII     ST +FWK+
Sbjct: 434 FNSSGYTWVSVEMLTFLII--GALSTCIFWKQ 463


>Z75525-7|CAH10769.1|  573|Caenorhabditis elegans Hypothetical
           protein C03D6.3b protein.
          Length = 573

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = -3

Query: 260 FWKKNFITHTNLNGDEVSIFFSGSRTDRYYF 168
           F      +H +L+G ++ ++   + TDRYYF
Sbjct: 43  FHPAEVFSHPHLHGKKIGLWIDLTNTDRYYF 73


>Z75525-6|CAA99765.2|  623|Caenorhabditis elegans Hypothetical
           protein C03D6.3a protein.
          Length = 623

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = -3

Query: 260 FWKKNFITHTNLNGDEVSIFFSGSRTDRYYF 168
           F      +H +L+G ++ ++   + TDRYYF
Sbjct: 55  FHPAEVFSHPHLHGKKIGLWIDLTNTDRYYF 85


>AF003925-1|AAB61344.1|  573|Caenorhabditis elegans mRNA capping
           enzyme protein.
          Length = 573

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = -3

Query: 260 FWKKNFITHTNLNGDEVSIFFSGSRTDRYYF 168
           F      +H +L+G ++ ++   + TDRYYF
Sbjct: 43  FHPAEVFSHPHLHGKKIGLWIDLTNTDRYYF 73


>AY077615-1|AAL79359.1|  510|Caenorhabditis elegans KSR-2b protein.
          Length = 510

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 19/46 (41%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
 Frame = -1

Query: 301 SFSSFSRLTLVPPYS-GRRTLSPTLT*TGMKSPFSFRAPGPTATTS 167
           SFSS+ R +     S   RT S T T + + S     AP PTAT+S
Sbjct: 17  SFSSWRRSSTSGSISQSSRTTSKTTTSSSVTSSNPINAPPPTATSS 62


>AY077614-1|AAL79358.1|  550|Caenorhabditis elegans KSR-2a protein.
          Length = 550

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 19/46 (41%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
 Frame = -1

Query: 301 SFSSFSRLTLVPPYS-GRRTLSPTLT*TGMKSPFSFRAPGPTATTS 167
           SFSS+ R +     S   RT S T T + + S     AP PTAT+S
Sbjct: 21  SFSSWRRSSTSGSISQSSRTTSKTTTSSSVTSSNPINAPPPTATSS 66


>AL137227-5|CAB70240.2|  510|Caenorhabditis elegans Hypothetical
           protein F58D5.4b protein.
          Length = 510

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 19/46 (41%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
 Frame = -1

Query: 301 SFSSFSRLTLVPPYS-GRRTLSPTLT*TGMKSPFSFRAPGPTATTS 167
           SFSS+ R +     S   RT S T T + + S     AP PTAT+S
Sbjct: 17  SFSSWRRSSTSGSISQSSRTTSKTTTSSSVTSSNPINAPPPTATSS 62


>AL137227-4|CAB70239.2|  550|Caenorhabditis elegans Hypothetical
           protein F58D5.4a protein.
          Length = 550

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 19/46 (41%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
 Frame = -1

Query: 301 SFSSFSRLTLVPPYS-GRRTLSPTLT*TGMKSPFSFRAPGPTATTS 167
           SFSS+ R +     S   RT S T T + + S     AP PTAT+S
Sbjct: 21  SFSSWRRSSTSGSISQSSRTTSKTTTSSSVTSSNPINAPPPTATSS 66


>Z70034-14|CAC44294.1|  356|Caenorhabditis elegans Hypothetical
           protein C18E9.11b protein.
          Length = 356

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 19/63 (30%), Positives = 31/63 (49%), Gaps = 3/63 (4%)
 Frame = -3

Query: 386 NRIRITC*SYHHSVFNFRQYVRLSEEMIFFLIIFKAYFST---AVFWKKNFITHTNLNGD 216
           NRI  T      S+F F +  +L E+++  +  F  Y+ST     F +  FI  +N  G 
Sbjct: 161 NRILTTVQKCQRSIFIFDEADKLPEQLLGAIKPFLDYYSTISGVDFRRSIFILLSNKGGG 220

Query: 215 EVS 207
           E++
Sbjct: 221 EIA 223


>Z70034-13|CAC44293.1|  350|Caenorhabditis elegans Hypothetical
           protein C18E9.11a protein.
          Length = 350

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 19/63 (30%), Positives = 31/63 (49%), Gaps = 3/63 (4%)
 Frame = -3

Query: 386 NRIRITC*SYHHSVFNFRQYVRLSEEMIFFLIIFKAYFST---AVFWKKNFITHTNLNGD 216
           NRI  T      S+F F +  +L E+++  +  F  Y+ST     F +  FI  +N  G 
Sbjct: 155 NRILTTVQKCQRSIFIFDEADKLPEQLLGAIKPFLDYYSTISGVDFRRSIFILLSNKGGG 214

Query: 215 EVS 207
           E++
Sbjct: 215 EIA 217


>Z49910-11|CAC44292.1|  356|Caenorhabditis elegans Hypothetical
           protein C18E9.11b protein.
          Length = 356

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 19/63 (30%), Positives = 31/63 (49%), Gaps = 3/63 (4%)
 Frame = -3

Query: 386 NRIRITC*SYHHSVFNFRQYVRLSEEMIFFLIIFKAYFST---AVFWKKNFITHTNLNGD 216
           NRI  T      S+F F +  +L E+++  +  F  Y+ST     F +  FI  +N  G 
Sbjct: 161 NRILTTVQKCQRSIFIFDEADKLPEQLLGAIKPFLDYYSTISGVDFRRSIFILLSNKGGG 220

Query: 215 EVS 207
           E++
Sbjct: 221 EIA 223


>Z49910-10|CAC44291.1|  350|Caenorhabditis elegans Hypothetical
           protein C18E9.11a protein.
          Length = 350

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 19/63 (30%), Positives = 31/63 (49%), Gaps = 3/63 (4%)
 Frame = -3

Query: 386 NRIRITC*SYHHSVFNFRQYVRLSEEMIFFLIIFKAYFST---AVFWKKNFITHTNLNGD 216
           NRI  T      S+F F +  +L E+++  +  F  Y+ST     F +  FI  +N  G 
Sbjct: 155 NRILTTVQKCQRSIFIFDEADKLPEQLLGAIKPFLDYYSTISGVDFRRSIFILLSNKGGG 214

Query: 215 EVS 207
           E++
Sbjct: 215 EIA 217


>Z92804-2|CAB07253.2|  321|Caenorhabditis elegans Hypothetical
           protein K05D4.3 protein.
          Length = 321

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 20/62 (32%), Positives = 34/62 (54%), Gaps = 1/62 (1%)
 Frame = -3

Query: 419 QRF-ICARYN*TNRIRITC*SYHHSVFNFRQYVRLSEEMIFFLIIFKAYFSTAVFWKKNF 243
           QRF IC      N ++IT  + +  VF    Y  L E++IFFL+  + + +  VF+  ++
Sbjct: 129 QRFCICFHPRSENYLKITHGTLNWIVFIGYAYFLL-EKVIFFLMCLRDFEAAKVFYMFSY 187

Query: 242 IT 237
           I+
Sbjct: 188 IS 189


>Z69383-4|CAA93411.2|  326|Caenorhabditis elegans Hypothetical
           protein F13E9.9 protein.
          Length = 326

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
 Frame = +3

Query: 117 AGGIVIPEKAQS--KVLHGEVVAVGPGARKENGD 212
           +G   IPEK     K + G+  ++ PG +K+NGD
Sbjct: 207 SGAASIPEKVVDGVKSIPGKAKSILPGGKKKNGD 240


>AF125459-6|AAN60503.1|  219|Caenorhabditis elegans Hypothetical
           protein Y25C1A.8b protein.
          Length = 219

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 16/63 (25%), Positives = 25/63 (39%)
 Frame = +2

Query: 38  NGQCSKTIGSSSGPCPDQKS*SYNQNCRRHCHPREGSIQGFTRRSSSGRSWSPKRKWRLH 217
           + +CS +       CP+ +        + H   RE   +   +RS+S R    KR  R  
Sbjct: 102 DSECSCSCSGGECSCPESEDEKEKDRRKMHKTSRERDRESHRKRSNSPRDRDRKRGKRSR 161

Query: 218 PRS 226
            RS
Sbjct: 162 SRS 164


>AF125459-5|AAD12844.1|  345|Caenorhabditis elegans Hypothetical
           protein Y25C1A.8a protein.
          Length = 345

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 16/63 (25%), Positives = 25/63 (39%)
 Frame = +2

Query: 38  NGQCSKTIGSSSGPCPDQKS*SYNQNCRRHCHPREGSIQGFTRRSSSGRSWSPKRKWRLH 217
           + +CS +       CP+ +        + H   RE   +   +RS+S R    KR  R  
Sbjct: 228 DSECSCSCSGGECSCPESEDEKEKDRRKMHKTSRERDRESHRKRSNSPRDRDRKRGKRSR 287

Query: 218 PRS 226
            RS
Sbjct: 288 SRS 290


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,877,947
Number of Sequences: 27780
Number of extensions: 191692
Number of successful extensions: 579
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 535
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 578
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 985905834
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)