Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc19f07
(514 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g14980.1 68414.m01790 10 kDa chaperonin (CPN10) identical to ... 106 1e-23
At1g23100.1 68414.m02888 10 kDa chaperonin, putative similar to ... 100 7e-22
At5g20720.2 68418.m02461 20 kDa chaperonin, chloroplast (CPN21) ... 77 9e-15
At5g20720.1 68418.m02460 20 kDa chaperonin, chloroplast (CPN21) ... 77 9e-15
At2g44650.1 68415.m05557 chloroplast chaperonin 10 (cpn10) ident... 49 2e-06
At3g60210.1 68416.m06728 chloroplast chaperonin 10, putative sim... 47 9e-06
At2g29210.1 68415.m03550 splicing factor PWI domain-containing p... 29 1.4
At1g68725.1 68414.m07853 arabinogalactan-protein, putative (AGP1... 29 1.8
At5g53010.1 68418.m06584 calcium-transporting ATPase, putative 27 7.4
At1g63410.1 68414.m07171 expressed protein contains Pfam profile... 27 7.4
At5g14940.1 68418.m01753 proton-dependent oligopeptide transport... 27 9.8
At1g26360.1 68414.m03216 hydrolase, alpha/beta fold family prote... 27 9.8
At1g22930.1 68414.m02866 T-complex protein 11 contains Pfam PF05... 27 9.8
At1g04645.1 68414.m00461 self-incompatibility protein-related si... 27 9.8
>At1g14980.1 68414.m01790 10 kDa chaperonin (CPN10) identical to
SP:P34893 from [Arabidopsis thaliana]
Length = 98
Score = 106 bits (254), Expect = 1e-23
Identities = 51/97 (52%), Positives = 70/97 (72%)
Frame = +3
Query: 51 VKRLVPLLDRVLIKRAEAITKTAGGIVIPEKAQSKVLHGEVVAVGPGARKENGDFIPVQV 230
+KRL+P +R+L++R KT GI++PEK+ SK+ G+V+AVGPG+R ++G IPV V
Sbjct: 2 MKRLIPTFNRILVQRVIQPAKTESGILLPEKS-SKLNSGKVIAVGPGSRDKDGKLIPVSV 60
Query: 231 SVGDKVLLPEYGGTKVSLENDEKEYHLFRESDILAKI 341
GD VLLPEYGGT+V L E EYHLFR+ D+L +
Sbjct: 61 KEGDTVLLPEYGGTQVKL--GENEYHLFRDEDVLGTL 95
>At1g23100.1 68414.m02888 10 kDa chaperonin, putative similar to 10
kDa chaperonin SP:P34893 from [Arabidopsis thaliana]
Length = 97
Score = 100 bits (239), Expect = 7e-22
Identities = 50/96 (52%), Positives = 70/96 (72%)
Frame = +3
Query: 54 KRLVPLLDRVLIKRAEAITKTAGGIVIPEKAQSKVLHGEVVAVGPGARKENGDFIPVQVS 233
KRL+P L+RVL+++ +KT GI++PEK+ S++ G V+AVGPGAR G+ IPV V
Sbjct: 3 KRLIPTLNRVLVEKILPPSKTVSGILLPEKS-SQLNSGRVIAVGPGARDRAGNLIPVSVK 61
Query: 234 VGDKVLLPEYGGTKVSLENDEKEYHLFRESDILAKI 341
GD VLLPE+GGT+V L EKE+ L+R+ DI+A +
Sbjct: 62 EGDNVLLPEFGGTQVKL--GEKEFLLYRDEDIMATL 95
>At5g20720.2 68418.m02461 20 kDa chaperonin, chloroplast (CPN21)
(CHCPN10) (CPN20) identical to chloroplast 20 kDa
chaperonin, chloroplast precursor (Protein Cpn21),
chloroplast protein Cpn10, chloroplast chaperonin 10
(Ch-CPN10), SP|O65282 from [Arabidopsis thaliana];
identical to cDNA chaperonin 20 GI:14587372
Length = 253
Score = 76.6 bits (180), Expect = 9e-15
Identities = 42/95 (44%), Positives = 53/95 (55%)
Frame = +3
Query: 51 VKRLVPLLDRVLIKRAEAITKTAGGIVIPEKAQSKVLHGEVVAVGPGARKENGDFIPVQV 230
+K L PL DRV IK AEA KTAGG+++ E + K G V+AVGPG+ E G P+ V
Sbjct: 157 IKDLKPLNDRVFIKVAEAEEKTAGGLLLTETTKEKPSIGTVIAVGPGSLDEEGKITPLPV 216
Query: 231 SVGDKVLLPEYGGTKVSLENDEKEYHLFRESDILA 335
S G VL +Y G D Y R SD++A
Sbjct: 217 STGSTVLYSKYAGNDFK-GKDGSNYIALRASDVMA 250
Score = 69.7 bits (163), Expect = 1e-12
Identities = 48/116 (41%), Positives = 67/116 (57%)
Frame = +3
Query: 66 PLLDRVLIKRAEAITKTAGGIVIPEKAQSKVLHGEVVAVGPGARKENGDFIPVQVSVGDK 245
PL DRVL+K EA KT GGI++P AQSK GEVVAVG G R + I + V G +
Sbjct: 64 PLGDRVLVKIKEAEEKTLGGILLPSTAQSKPQGGEVVAVGEG-RTIGKNKIDITVPTGAQ 122
Query: 246 VLLPEYGGTKVSLENDEKEYHLFRESDILAKIEN*MMVALTCDSNSVSLVVACANE 413
++ +Y GT+V ND K + + +E DI+ +E + L ++ V + VA A E
Sbjct: 123 IIYSKYAGTEVEF-NDVK-HLILKEDDIVGILETEDIKDLKPLNDRVFIKVAEAEE 176
>At5g20720.1 68418.m02460 20 kDa chaperonin, chloroplast (CPN21)
(CHCPN10) (CPN20) identical to chloroplast 20 kDa
chaperonin, chloroplast precursor (Protein Cpn21),
chloroplast protein Cpn10, chloroplast chaperonin 10
(Ch-CPN10), SP|O65282 from [Arabidopsis thaliana];
identical to cDNA chaperonin 20 GI:14587372
Length = 253
Score = 76.6 bits (180), Expect = 9e-15
Identities = 42/95 (44%), Positives = 53/95 (55%)
Frame = +3
Query: 51 VKRLVPLLDRVLIKRAEAITKTAGGIVIPEKAQSKVLHGEVVAVGPGARKENGDFIPVQV 230
+K L PL DRV IK AEA KTAGG+++ E + K G V+AVGPG+ E G P+ V
Sbjct: 157 IKDLKPLNDRVFIKVAEAEEKTAGGLLLTETTKEKPSIGTVIAVGPGSLDEEGKITPLPV 216
Query: 231 SVGDKVLLPEYGGTKVSLENDEKEYHLFRESDILA 335
S G VL +Y G D Y R SD++A
Sbjct: 217 STGSTVLYSKYAGNDFK-GKDGSNYIALRASDVMA 250
Score = 69.7 bits (163), Expect = 1e-12
Identities = 48/116 (41%), Positives = 67/116 (57%)
Frame = +3
Query: 66 PLLDRVLIKRAEAITKTAGGIVIPEKAQSKVLHGEVVAVGPGARKENGDFIPVQVSVGDK 245
PL DRVL+K EA KT GGI++P AQSK GEVVAVG G R + I + V G +
Sbjct: 64 PLGDRVLVKIKEAEEKTLGGILLPSTAQSKPQGGEVVAVGEG-RTIGKNKIDITVPTGAQ 122
Query: 246 VLLPEYGGTKVSLENDEKEYHLFRESDILAKIEN*MMVALTCDSNSVSLVVACANE 413
++ +Y GT+V ND K + + +E DI+ +E + L ++ V + VA A E
Sbjct: 123 IIYSKYAGTEVEF-NDVK-HLILKEDDIVGILETEDIKDLKPLNDRVFIKVAEAEE 176
>At2g44650.1 68415.m05557 chloroplast chaperonin 10 (cpn10)
identical to chloroplast chaperonin 10 GI:14041813 from
[Arabidopsis thaliana]
Length = 139
Score = 48.8 bits (111), Expect = 2e-06
Identities = 34/99 (34%), Positives = 56/99 (56%), Gaps = 3/99 (3%)
Frame = +3
Query: 57 RLVPLLDRVLIKRAEAITKTAGGIVIPEKAQ--SKVLHGEVVAVGPGARKENGDFIPVQV 230
++VP DRVL++ + K++GG+++P+ A + L GE+++VG E G QV
Sbjct: 51 KVVPQADRVLVRLEDLPIKSSGGVLLPKAAVKFERYLTGEIISVG----SEVGQ----QV 102
Query: 231 SVGDKVLLPEYGGTKVSLENDEKEYHLF-RESDILAKIE 344
G +VL + +V L D + H F +ESD+LA +E
Sbjct: 103 GPGKRVLFSDVSAYEVDLGTDAR--HCFCKESDLLALVE 139
>At3g60210.1 68416.m06728 chloroplast chaperonin 10, putative
similar to chloroplast chaperonin 10 GI:14041813 from
[Arabidopsis thaliana]
Length = 138
Score = 46.8 bits (106), Expect = 9e-06
Identities = 31/98 (31%), Positives = 54/98 (55%), Gaps = 2/98 (2%)
Frame = +3
Query: 57 RLVPLLDRVLIKRAEAITKTAGGIVIPEKAQ--SKVLHGEVVAVGPGARKENGDFIPVQV 230
++VP DRVL++ K++GG+++P+ A + L GEVV+VG E G+ P
Sbjct: 50 KVVPQADRVLVRLEVLPEKSSGGVLLPKSAVKFERYLTGEVVSVG----SEVGEVEP--- 102
Query: 231 SVGDKVLLPEYGGTKVSLENDEKEYHLFRESDILAKIE 344
G KVL + +V ++ ++ +ESD+LA ++
Sbjct: 103 --GKKVLFSDMSAYEVDFGTEDAKHCFCKESDLLAIVQ 138
>At2g29210.1 68415.m03550 splicing factor PWI domain-containing
protein contains Pfam profile PF01480: PWI domain
Length = 878
Score = 29.5 bits (63), Expect = 1.4
Identities = 22/65 (33%), Positives = 33/65 (50%), Gaps = 3/65 (4%)
Frame = +2
Query: 32 NRNGQCSKTIGSSSGPCPDQKS*SYNQNCRRHCHPREGSIQGFTRRSSS---GRSWSPKR 202
+R+ SKT S ++KS S +Q+ PR+ + RRS S RS SP+R
Sbjct: 215 SRSRSISKTNSGSKSYSGERKSRSTSQSSDASISPRKRRLSNSRRRSRSRSVRRSLSPRR 274
Query: 203 KWRLH 217
+ R+H
Sbjct: 275 R-RIH 278
>At1g68725.1 68414.m07853 arabinogalactan-protein, putative (AGP19)
non-consensus splice site at the intron:exon boundary
(AT:exon)
Length = 247
Score = 29.1 bits (62), Expect = 1.8
Identities = 21/63 (33%), Positives = 27/63 (42%)
Frame = -1
Query: 301 SFSSFSRLTLVPPYSGRRTLSPTLT*TGMKSPFSFRAPGPTATTSPCKTLD*AFSGMTMP 122
SFS ++ P + T P T +P + AP PT TT P S +T P
Sbjct: 19 SFSVNAQGPAASPVTSTTTAPPPTT----AAPPTTAAPPPTTTTPPVSAAQPPASPVTPP 74
Query: 121 PAV 113
PAV
Sbjct: 75 PAV 77
>At5g53010.1 68418.m06584 calcium-transporting ATPase, putative
Length = 1049
Score = 27.1 bits (57), Expect = 7.4
Identities = 17/50 (34%), Positives = 23/50 (46%)
Frame = +3
Query: 69 LLDRVLIKRAEAITKTAGGIVIPEKAQSKVLHGEVVAVGPGARKENGDFI 218
LL + L KR + T GI P+ + + + G A KEN DFI
Sbjct: 774 LLVQALKKRGHIVAATGMGIHDPKTLREADVSLAMGVGGTAAAKENSDFI 823
>At1g63410.1 68414.m07171 expressed protein contains Pfam profile
PF04525: Protein of unknown function (DUF567);
expression supported by MPSS
Length = 173
Score = 27.1 bits (57), Expect = 7.4
Identities = 11/32 (34%), Positives = 20/32 (62%)
Frame = +3
Query: 159 LHGEVVAVGPGARKENGDFIPVQVSVGDKVLL 254
+HG ++A G K+ DF +V+VGD++ +
Sbjct: 140 IHGNIIAQIDGEVKQLRDFEEEEVAVGDEIAI 171
>At5g14940.1 68418.m01753 proton-dependent oligopeptide transport
(POT) family protein contains Pfam profile: PF00854 POT
family
Length = 552
Score = 26.6 bits (56), Expect = 9.8
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = +3
Query: 60 LVPLLDRVLIKRAEAITKTAGGIVIPEK 143
L+P D++LI A+ +TK GI + E+
Sbjct: 364 LMPFYDKILIPIAKKLTKNEKGISVKER 391
>At1g26360.1 68414.m03216 hydrolase, alpha/beta fold family protein
similar to SP|Q40708 PIR7A protein {Oryza sativa},
ethylene-induced esterase [Citrus sinensis] GI:14279437,
polyneuridine aldehyde esterase [Rauvolfia serpentina]
GI:6651393; contains Pfam profile PF00561: alpha/beta
hydrolase fold
Length = 444
Score = 26.6 bits (56), Expect = 9.8
Identities = 16/38 (42%), Positives = 23/38 (60%)
Frame = -1
Query: 283 RLTLVPPYSGRRTLSPTLT*TGMKSPFSFRAPGPTATT 170
RL+L+P + RRTL P+L+ +G S S + G A T
Sbjct: 35 RLSLMPSFR-RRTLLPSLSCSGSSSTSSSKKGGIKAKT 71
>At1g22930.1 68414.m02866 T-complex protein 11 contains Pfam PF05794:
T-complex protein 11
Length = 1131
Score = 26.6 bits (56), Expect = 9.8
Identities = 21/83 (25%), Positives = 38/83 (45%)
Frame = +3
Query: 111 KTAGGIVIPEKAQSKVLHGEVVAVGPGARKENGDFIPVQVSVGDKVLLPEYGGTKVSLEN 290
KT G + P SK V+ + G+ + + V +G L+ + G +
Sbjct: 908 KTGGSFLSPVNTTSK---STVMDTAGQLSECKGERVDLAVRLGLLKLVNQVAGLTPEVLP 964
Query: 291 DEKEYHLFRESDILAKIEN*MMV 359
+ + +LFR DI A+I+N ++V
Sbjct: 965 ETFQLNLFRVRDIQAEIQNIIVV 987
>At1g04645.1 68414.m00461 self-incompatibility protein-related
similar to S3 self-incompatibility protein [Papaver
rhoeas] GI:1107841
Length = 128
Score = 26.6 bits (56), Expect = 9.8
Identities = 11/28 (39%), Positives = 14/28 (50%)
Frame = -3
Query: 302 FFLIIFKAYFSTAVFWKKNFITHTNLNG 219
FFL+ Y FW+ +T TNL G
Sbjct: 11 FFLLFGSGYGGLPPFWRATVVTMTNLIG 38
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,321,007
Number of Sequences: 28952
Number of extensions: 181590
Number of successful extensions: 503
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 493
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 498
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 927799552
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -