Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc19f05
(592 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC14C8.16c |bot1||mitochondrial ribosomal protein subunit S35 ... 29 0.67
SPCC320.03 |||transcription factor |Schizosaccharomyces pombe|ch... 27 1.5
SPBC337.03 |||conserved eukaryotic protein|Schizosaccharomyces p... 27 2.7
SPBC32H8.10 |cdk9||cyclin-dependent protein kinase Cdk9 |Schizos... 26 4.7
SPAC1071.01c |pta1|SPAC4H3.15c|mRNA cleavage and polyadenylation... 26 4.7
SPAC1399.05c |||transcription factor, zf-fungal binuclear cluste... 26 4.7
SPAC890.06 |||nucleoporin Nup157/170|Schizosaccharomyces pombe|c... 26 4.7
SPBC1709.02c |vas2|SPBC1734.18c|valine-tRNA ligase Vas2 |Schizos... 25 6.2
SPCC777.08c |||HbrB family protein|Schizosaccharomyces pombe|chr... 25 6.2
SPBC3E7.01 |fab1|ste12, SPBC6B1.11c|1-phosphatidylinositol-3-pho... 25 8.3
SPAPB1E7.06c |eme1||Holliday junction resolvase subunit Eme1|Sch... 25 8.3
SPAC3A12.06c |||sodium/calcium exchanger |Schizosaccharomyces po... 25 8.3
SPAC10F6.01c ||SPAC4C5.05c|sulfite reductase beta subunit |Schiz... 25 8.3
>SPBC14C8.16c |bot1||mitochondrial ribosomal protein subunit S35
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 315
Score = 28.7 bits (61), Expect = 0.67
Identities = 16/48 (33%), Positives = 25/48 (52%)
Frame = +2
Query: 293 ASYFPSYKEIIEVAIKRLNKINPDLKSSPRAMLQHYNECLENLDNPVT 436
A F + + IE IK L +IN + + + +L YNE +E + N T
Sbjct: 154 ARKFNTSPQRIEALIK-LRRINDEFEEKKKPILHSYNEVMEKMLNACT 200
>SPCC320.03 |||transcription factor |Schizosaccharomyces pombe|chr
3|||Manual
Length = 867
Score = 27.5 bits (58), Expect = 1.5
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = +2
Query: 359 PDLKSSPRAMLQHYNECLENLDNPVTDEHH 448
P+L++ R L+H EC+E + V+ E H
Sbjct: 771 PELQNEARRGLEHIRECIEKRRDIVSREDH 800
>SPBC337.03 |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 387
Score = 26.6 bits (56), Expect = 2.7
Identities = 12/53 (22%), Positives = 31/53 (58%)
Frame = +2
Query: 311 YKEIIEVAIKRLNKINPDLKSSPRAMLQHYNECLENLDNPVTDEHHLLTFGKE 469
Y E+++ K+LNK + K + +A ++ + + +L++ + ++ LL+ +E
Sbjct: 186 YSELLDNYKKQLNKASESCKGNYQACIESRSTLITSLESLIEEQKKLLSEEEE 238
>SPBC32H8.10 |cdk9||cyclin-dependent protein kinase Cdk9
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 591
Score = 25.8 bits (54), Expect = 4.7
Identities = 17/39 (43%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Frame = +2
Query: 152 FNEPTQKNYEYIKKLFLRTKYMDDS-IDYKDFNRRILLI 265
F EP K Y +K+LF TKY+ D I ++D LLI
Sbjct: 138 FTEPQIKCY--MKQLFAGTKYLHDQLILHRDLKAANLLI 174
>SPAC1071.01c |pta1|SPAC4H3.15c|mRNA cleavage and polyadenylation
specificity factor complex subunit
Pta1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 670
Score = 25.8 bits (54), Expect = 4.7
Identities = 15/44 (34%), Positives = 20/44 (45%)
Frame = +2
Query: 317 EIIEVAIKRLNKINPDLKSSPRAMLQHYNECLENLDNPVTDEHH 448
E A+ RL P + S + N LEN+DN V D+ H
Sbjct: 471 EYFHGALSRLFDYAPQFERSIVSSSNLQNLTLENVDNTVWDKRH 514
>SPAC1399.05c |||transcription factor, zf-fungal binuclear cluster
type|Schizosaccharomyces pombe|chr 1|||Manual
Length = 529
Score = 25.8 bits (54), Expect = 4.7
Identities = 19/71 (26%), Positives = 33/71 (46%), Gaps = 2/71 (2%)
Frame = +2
Query: 26 NFVDVDTFARQLITDKCSALIKNADLLPANILEIVEKARDRYFNEPT--QKNYEYIKKLF 199
+ D + F R++ D A+ N + N L+++EKA N P Q + + K +F
Sbjct: 59 SLADPNHFIRKVENDNMDAISANINSKLENRLKVLEKAISSITNSPIAGQISLKSEKDVF 118
Query: 200 LRTKYMDDSID 232
L+ D I+
Sbjct: 119 LQGLLSMDEIE 129
>SPAC890.06 |||nucleoporin Nup157/170|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1315
Score = 25.8 bits (54), Expect = 4.7
Identities = 15/54 (27%), Positives = 25/54 (46%)
Frame = +2
Query: 56 QLITDKCSALIKNADLLPANILEIVEKARDRYFNEPTQKNYEYIKKLFLRTKYM 217
QL+ KC + D+L +E ++KA+D E Q E LF + ++
Sbjct: 803 QLLRKKCGSFCSADDVLIFKAVESLKKAKDTVDIEERQSLIELSYTLFKKAAHV 856
>SPBC1709.02c |vas2|SPBC1734.18c|valine-tRNA ligase Vas2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 980
Score = 25.4 bits (53), Expect = 6.2
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = +3
Query: 462 EKKLLQKYSSKRLNTVTPTLMPSAW 536
EKK+LQ S L + P + SAW
Sbjct: 82 EKKVLQDLDSPALKSYNPKAVESAW 106
>SPCC777.08c |||HbrB family protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 422
Score = 25.4 bits (53), Expect = 6.2
Identities = 9/22 (40%), Positives = 17/22 (77%)
Frame = +3
Query: 132 KRPETGILMSQLKKTMNTLKNY 197
K+P+ G+ +S L+KT+N +N+
Sbjct: 137 KKPKDGLDLSALQKTLNGSRNF 158
>SPBC3E7.01 |fab1|ste12,
SPBC6B1.11c|1-phosphatidylinositol-3-phosphate 5-kinase
Fab1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 1932
Score = 25.0 bits (52), Expect = 8.3
Identities = 8/19 (42%), Positives = 14/19 (73%)
Frame = +2
Query: 299 YFPSYKEIIEVAIKRLNKI 355
Y PSYKE+ ++A ++ K+
Sbjct: 1211 YLPSYKELSKIAAAQIKKV 1229
>SPAPB1E7.06c |eme1||Holliday junction resolvase subunit
Eme1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 738
Score = 25.0 bits (52), Expect = 8.3
Identities = 30/125 (24%), Positives = 55/125 (44%), Gaps = 8/125 (6%)
Frame = +2
Query: 146 RYFNEPTQK-NYEYIKKLFLRTKYMDDSIDYKDFNRRILLIVFKFALN--KSASYFPSYK 316
+Y N +K E ++ F + ++ S D K+ + I+ AL+ K S F +
Sbjct: 585 KYQNFTKEKLESEIVRFSFEHSILINTSNDEKETAQWIVSFTGDIALSRYKHFSKFSARA 644
Query: 317 EIIEVA-IKRLNKINPDLKSSPRAMLQHY----NECLENLDNPVTDEHHLLTFGKEVATK 481
E+ +K ++I L R +L+ N + D+ + HHL T G+E T
Sbjct: 645 STTEIGHVKSADRIENSLNFMLRQILRVTPNIANAICDQFDSIPSLIHHLKTHGEESLTN 704
Query: 482 IFIEA 496
+ I++
Sbjct: 705 VVIQS 709
>SPAC3A12.06c |||sodium/calcium exchanger |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 743
Score = 25.0 bits (52), Expect = 8.3
Identities = 10/33 (30%), Positives = 21/33 (63%)
Frame = -1
Query: 238 FIIYRIVHVFCS*K*FFNVFIVFLSWLIKIPVS 140
++I+ + + S FF+ +V +SWL+++P S
Sbjct: 118 WLIFLFITIGISASDFFSTNLVTISWLLQLPDS 150
>SPAC10F6.01c ||SPAC4C5.05c|sulfite reductase beta subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1473
Score = 25.0 bits (52), Expect = 8.3
Identities = 15/62 (24%), Positives = 28/62 (45%)
Frame = +2
Query: 257 LLIVFKFALNKSASYFPSYKEIIEVAIKRLNKINPDLKSSPRAMLQHYNECLENLDNPVT 436
L+I +FAL Y + + L + N + S +L ++ ++NL++PV
Sbjct: 433 LIISPQFALGSVLEYENQRRAFCDEVATLLKEKNSSVSSESLEVLSNWIVSVDNLESPVD 492
Query: 437 DE 442
E
Sbjct: 493 PE 494
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,316,364
Number of Sequences: 5004
Number of extensions: 47117
Number of successful extensions: 178
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 173
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 178
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 256184654
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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