Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc19f05
         (592 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_1402 - 26786011-26786128,26786263-26786516,26787505-267877...    28   4.8  
05_07_0290 + 29016410-29018920                                         28   4.8  
09_06_0283 + 22024779-22026134,22026181-22026714                       28   6.4  
02_05_0227 - 26994462-26994591,26994714-26994803,26994895-269950...    28   6.4  

>08_02_1402 -
           26786011-26786128,26786263-26786516,26787505-26787732,
           26788920-26789759
          Length = 479

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 13/51 (25%), Positives = 25/51 (49%)
 Frame = +2

Query: 299 YFPSYKEIIEVAIKRLNKINPDLKSSPRAMLQHYNECLENLDNPVTDEHHL 451
           YF + ++I+   + +L+  NP  +S+ R      + C   +D P T   H+
Sbjct: 337 YFAAAEDIMSTNVCQLSSKNPSTRSNKRKA----SSCASTIDGPTTSTSHV 383


>05_07_0290 + 29016410-29018920
          Length = 836

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 11/38 (28%), Positives = 21/38 (55%)
 Frame = +2

Query: 122 EIVEKARDRYFNEPTQKNYEYIKKLFLRTKYMDDSIDY 235
           E  +    +Y  +PT +NY  +  L  R  Y+D+++D+
Sbjct: 585 EYFDSMETKYGVKPTTENYACMVDLLARCGYLDEAMDF 622


>09_06_0283 + 22024779-22026134,22026181-22026714
          Length = 629

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 12/42 (28%), Positives = 24/42 (57%)
 Frame = +2

Query: 359 PDLKSSPRAMLQHYNECLENLDNPVTDEHHLLTFGKEVATKI 484
           P+++ SP   ++ YNE L  +D+    +  +++F    ATK+
Sbjct: 268 PEVQESPYIRIRSYNELLLTMDSQFPTDICIVSFKLSDATKV 309


>02_05_0227 -
           26994462-26994591,26994714-26994803,26994895-26995022,
           26995179-26995573,26995666-26995792,26995909-26995986,
           26996096-26996198,26996315-26996589,26996700-26996726
          Length = 450

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 13/64 (20%), Positives = 33/64 (51%)
 Frame = +2

Query: 44  TFARQLITDKCSALIKNADLLPANILEIVEKARDRYFNEPTQKNYEYIKKLFLRTKYMDD 223
           + AR++I + CS++IK    +P+N   +   ++ +      Q+  +++K+   +   +  
Sbjct: 112 SLARRVIEEGCSSIIKEKQNVPSNKSSVSSASKKQPIPSGQQQKPKFVKEEKRKVDALRQ 171

Query: 224 SIDY 235
           + DY
Sbjct: 172 NRDY 175


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,494,159
Number of Sequences: 37544
Number of extensions: 247281
Number of successful extensions: 526
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 514
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 526
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1400060088
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)