Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc19f05
         (592 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_37194| Best HMM Match : Pigment_DH (HMM E-Value=4.9)                34   0.076
SB_42635| Best HMM Match : 7TMR-DISM_7TM (HMM E-Value=1.6)             29   2.8  
SB_27389| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.8  
SB_936| Best HMM Match : DUF1127 (HMM E-Value=3.2)                     29   2.8  
SB_35183| Best HMM Match : 7TMR-DISM_7TM (HMM E-Value=3.9)             28   5.0  
SB_21960| Best HMM Match : rve (HMM E-Value=4e-23)                     28   5.0  
SB_7928| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   6.6  
SB_8500| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   8.7  

>SB_37194| Best HMM Match : Pigment_DH (HMM E-Value=4.9)
          Length = 371

 Score = 34.3 bits (75), Expect = 0.076
 Identities = 28/104 (26%), Positives = 49/104 (47%)
 Frame = +2

Query: 77  SALIKNADLLPANILEIVEKARDRYFNEPTQKNYEYIKKLFLRTKYMDDSIDYKDFNRRI 256
           ++L+ N+ +LP ++ E V K+    F++  +       K F   + +    DYK     +
Sbjct: 67  ASLVANSVVLPRSVCEAVLKSEHLKFDDEVKWC-----KSFQLLRVISGGTDYKGCRDVL 121

Query: 257 LLIVFKFALNKSASYFPSYKEIIEVAIKRLNKINPDLKSSPRAM 388
            L+  KF L       P+Y + IE A+K L+K+  D   S R +
Sbjct: 122 SLVFQKFNLIPKEPD-PAYTDRIECAVKSLSKLLSDYVDSFRPL 164


>SB_42635| Best HMM Match : 7TMR-DISM_7TM (HMM E-Value=1.6)
          Length = 409

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 16/72 (22%), Positives = 37/72 (51%), Gaps = 5/72 (6%)
 Frame = +2

Query: 371 SSPRAMLQHYNECLENLDNPVTDEHHLLTFGKEVA-----TKIFIEAFEYSYTNTNAISM 535
           +SP ++ QHY+   + + +P++   H LT+ + V      T+ ++  F+Y  T+  +++ 
Sbjct: 155 TSPMSLTQHYSTYFQYVTSPMSLTQHYLTYFQYVTSPMSLTQHYLTYFQY-VTSPMSLTQ 213

Query: 536 DKTDEFDFIKQP 571
                F ++  P
Sbjct: 214 HYLTYFQYVTSP 225



 Score = 28.3 bits (60), Expect = 5.0
 Identities = 16/72 (22%), Positives = 37/72 (51%), Gaps = 5/72 (6%)
 Frame = +2

Query: 371 SSPRAMLQHYNECLENLDNPVTDEHHLLTFGKEVA-----TKIFIEAFEYSYTNTNAISM 535
           +SP ++ QHY    + + +P++   H LT+ + V      T+ ++  F+Y  T+  +++ 
Sbjct: 206 TSPMSLTQHYLTYFQYVTSPMSLTQHYLTYFQYVTSPMSLTQHYLTYFQY-VTSPMSLTQ 264

Query: 536 DKTDEFDFIKQP 571
             +  F ++  P
Sbjct: 265 HYSTYFQYVTSP 276



 Score = 27.9 bits (59), Expect = 6.6
 Identities = 15/72 (20%), Positives = 32/72 (44%)
 Frame = +2

Query: 371 SSPRAMLQHYNECLENLDNPVTDEHHLLTFGKEVATKIFIEAFEYSYTNTNAISMDKTDE 550
           +SP ++ QHY+   + + +P++   H  T+ + V + + +     +Y       M  T  
Sbjct: 308 TSPMSLTQHYSTYFQYVTSPMSLTQHYSTYFQYVTSPMSLTQHYSTYFQYVTSPMSLTQH 367

Query: 551 FDFIKQPTLKSL 586
           +     P+  SL
Sbjct: 368 YSTYFLPSFDSL 379



 Score = 27.5 bits (58), Expect = 8.7
 Identities = 16/72 (22%), Positives = 36/72 (50%), Gaps = 5/72 (6%)
 Frame = +2

Query: 371 SSPRAMLQHYNECLENLDNPVTDEHHLLTFGKEVA-----TKIFIEAFEYSYTNTNAISM 535
           +SP ++ QHY    + + +P++   H LT+ + V      T+ ++  F+Y  T+  +++ 
Sbjct: 172 TSPMSLTQHYLTYFQYVTSPMSLTQHYLTYFQYVTSPMSLTQHYLTYFQY-VTSPMSLTQ 230

Query: 536 DKTDEFDFIKQP 571
                F ++  P
Sbjct: 231 HYLTYFQYVTSP 242



 Score = 27.5 bits (58), Expect = 8.7
 Identities = 16/72 (22%), Positives = 36/72 (50%), Gaps = 5/72 (6%)
 Frame = +2

Query: 371 SSPRAMLQHYNECLENLDNPVTDEHHLLTFGKEVA-----TKIFIEAFEYSYTNTNAISM 535
           +SP ++ QHY    + + +P++   H LT+ + V      T+ ++  F+Y  T+  +++ 
Sbjct: 189 TSPMSLTQHYLTYFQYVTSPMSLTQHYLTYFQYVTSPMSLTQHYLTYFQY-VTSPMSLTQ 247

Query: 536 DKTDEFDFIKQP 571
                F ++  P
Sbjct: 248 HYLTYFQYVTSP 259


>SB_27389| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 278

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 32/144 (22%), Positives = 67/144 (46%), Gaps = 4/144 (2%)
 Frame = +2

Query: 110 ANILEIVEKARDRYFNEPTQKNYEYIKKLFLRTKYMDDSIDYKDFNRRILLIVFKFALNK 289
           A+ L+  E   DR F+E  +     +K L  +     +S+ +      IL    KF  ++
Sbjct: 2   ASDLKATEDLLDRKFDEKLRPMKSSLKDLSSQLAEAVNSLAFLHDQCDILTKKVKFLESR 61

Query: 290 SASYFPSYKEIIEVAIKRLNKINPDLKSSPRAM--LQHYN--ECLENLDNPVTDEHHLLT 457
           + S   +  ++I+V    LN++  DL ++ +++  ++ Y+  +CLE    PVT   +   
Sbjct: 62  NTS-LETENKLIKV---ELNRMAGDLNTTKKSLDDIEQYSRRDCLEIKGVPVTPTENTND 117

Query: 458 FGKEVATKIFIEAFEYSYTNTNAI 529
             K+V   + +E  E   + ++ +
Sbjct: 118 VVKKVGELMEVEILEEDISTSHRL 141


>SB_936| Best HMM Match : DUF1127 (HMM E-Value=3.2)
          Length = 280

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 32/144 (22%), Positives = 67/144 (46%), Gaps = 4/144 (2%)
 Frame = +2

Query: 110 ANILEIVEKARDRYFNEPTQKNYEYIKKLFLRTKYMDDSIDYKDFNRRILLIVFKFALNK 289
           A+ L+  E   DR F+E  +     +K L  +     +S+ +      IL    KF  ++
Sbjct: 2   ASDLKATEDLLDRKFDEKLRPMKSSLKDLSSQLAEAVNSLAFLHDQCDILTKKVKFLESR 61

Query: 290 SASYFPSYKEIIEVAIKRLNKINPDLKSSPRAM--LQHYN--ECLENLDNPVTDEHHLLT 457
           + S   +  ++I+V    LN++  DL ++ +++  ++ Y+  +CLE    PVT   +   
Sbjct: 62  NTS-LETENKLIKV---ELNRMAGDLNTTKKSLDDIEQYSRRDCLEIKGVPVTPTENTND 117

Query: 458 FGKEVATKIFIEAFEYSYTNTNAI 529
             K+V   + +E  E   + ++ +
Sbjct: 118 VVKKVGELMEVEILEEDISTSHRL 141


>SB_35183| Best HMM Match : 7TMR-DISM_7TM (HMM E-Value=3.9)
          Length = 231

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 16/72 (22%), Positives = 37/72 (51%), Gaps = 5/72 (6%)
 Frame = +2

Query: 371 SSPRAMLQHYNECLENLDNPVTDEHHLLTFGKEVA-----TKIFIEAFEYSYTNTNAISM 535
           +SP ++ QHY    + + +P++   H LT+ + V      T+ ++  F+Y  T+  +++ 
Sbjct: 15  TSPMSLTQHYLTYFQYVTSPMSLTQHYLTYFQYVTSPMSLTQHYLTYFQY-VTSPMSLTQ 73

Query: 536 DKTDEFDFIKQP 571
             +  F ++  P
Sbjct: 74  HYSTYFQYVTSP 85



 Score = 27.9 bits (59), Expect = 6.6
 Identities = 15/72 (20%), Positives = 32/72 (44%)
 Frame = +2

Query: 371 SSPRAMLQHYNECLENLDNPVTDEHHLLTFGKEVATKIFIEAFEYSYTNTNAISMDKTDE 550
           +SP ++ QHY+   + + +P++   H  T+ + V + + +     +Y       M  T  
Sbjct: 117 TSPMSLTQHYSTYFQYVTSPMSLTQHYSTYFQYVTSPMSLTQHYSTYFQYVTSPMSLTQH 176

Query: 551 FDFIKQPTLKSL 586
           +     P+  SL
Sbjct: 177 YSTYFLPSFDSL 188


>SB_21960| Best HMM Match : rve (HMM E-Value=4e-23)
          Length = 1109

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 11/35 (31%), Positives = 18/35 (51%)
 Frame = +2

Query: 365 LKSSPRAMLQHYNECLENLDNPVTDEHHLLTFGKE 469
           +KS+P    +  NEC+E L N       ++ +G E
Sbjct: 388 IKSAPEEFQRRINECIEGLPNIAAVHDDIIIYGTE 422


>SB_7928| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 324

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = -2

Query: 135 FSTISKMFAGNRSAFLIRALHLSVISCLANVSTST 31
           F T S+ FAG+R   + R    SV+ CL  V  S+
Sbjct: 70  FITESEGFAGSRKGIMARVYETSVVLCLLAVLISS 104


>SB_8500| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3408

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 12/29 (41%), Positives = 19/29 (65%), Gaps = 3/29 (10%)
 Frame = +3

Query: 147 GILMSQLKKTMNT---LKNYFYEQNTWTI 224
           G+++S L++TMN    LK Y ++  TW I
Sbjct: 414 GLVVSTLEETMNVMSMLKRYLFDDMTWKI 442


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,292,579
Number of Sequences: 59808
Number of extensions: 321896
Number of successful extensions: 768
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 714
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 764
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1434459094
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)