Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc19f05
         (592 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X01472-2|CAA25702.1| 1058|Drosophila melanogaster protein ( Dros...    29   3.6  

>X01472-2|CAA25702.1| 1058|Drosophila melanogaster protein (
           Drosophila melanogastercopia-like element 17.6. ).
          Length = 1058

 Score = 29.5 bits (63), Expect = 3.6
 Identities = 33/139 (23%), Positives = 62/139 (44%), Gaps = 9/139 (6%)
 Frame = +2

Query: 14  MTSNNFVD--VDTFARQLITDKCSALIKNADLLPANILEIVEKARDRYFNEPTQKNYEYI 187
           MTS N  D  +   +  + T     ++  + ++P+ IL       + +   P  +NY+ +
Sbjct: 37  MTSKNIFDLPIQNTSTFIHTSNGPLIVNKSIIIPSKILF---PTTNEFLLHPFSENYDLL 93

Query: 188 --KKLFLRTKYMDDSIDYKD-----FNRRILLIVFKFALNKSASYFPSYKEIIEVAIKRL 346
             +KL    K    +I Y+D     +N +  LI  +       S+F +   I +  +++ 
Sbjct: 94  LGRKLLAEAKA---TISYRDQEVTLYNNKYKLI--EGIATHEQSHFQNVNMIPDTMLRQP 148

Query: 347 NKINPDLKSSPRAMLQHYN 403
           NKI+P L+S     L+H N
Sbjct: 149 NKISPILESD-LYRLEHLN 166


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,338,578
Number of Sequences: 53049
Number of extensions: 455819
Number of successful extensions: 1127
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 1102
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1127
length of database: 24,988,368
effective HSP length: 81
effective length of database: 20,691,399
effective search space used: 2379510885
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)