Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc19f05
(592 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U41012-4|AAA82296.2| 413|Caenorhabditis elegans Hypothetical pr... 31 0.46
Z96100-1|CAB09530.2| 964|Caenorhabditis elegans Hypothetical pr... 29 1.9
Z81546-1|CAB04449.2| 859|Caenorhabditis elegans Hypothetical pr... 28 4.3
U53337-6|AAA96188.2| 510|Caenorhabditis elegans Acetylcholine r... 28 4.3
AC025724-2|AAG23378.2| 167|Caenorhabditis elegans Hypothetical ... 28 4.3
U59211-1|AAB09670.1| 420|Caenorhabditis elegans embryonic membr... 27 7.5
U53343-3|AAA96220.2| 420|Caenorhabditis elegans Innexin protein... 27 7.5
AY150815-1|AAN61049.1| 964|Caenorhabditis elegans ADR-1C protein. 27 7.5
AL132948-45|CAD31822.2| 542|Caenorhabditis elegans Hypothetical... 27 7.5
U50312-3|AAA92320.2| 494|Caenorhabditis elegans Hypothetical pr... 27 10.0
>U41012-4|AAA82296.2| 413|Caenorhabditis elegans Hypothetical
protein C06A6.5 protein.
Length = 413
Score = 31.5 bits (68), Expect = 0.46
Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
Frame = +2
Query: 20 SNNFVDVDTFARQLITDKCSALIKNADLLPANILEIVEKARD--RYFNEPTQKNYEYI 187
+ NF D D F +Q +TDKC L++ N+ E+ E+ YF +P K + +
Sbjct: 216 TGNFNDYD-FVKQWVTDKCIPLVREVTF--ENVEELTEEGMPFLIYFRDPDNKTTDKV 270
>Z96100-1|CAB09530.2| 964|Caenorhabditis elegans Hypothetical
protein H15N14.1c protein.
Length = 964
Score = 29.5 bits (63), Expect = 1.9
Identities = 19/68 (27%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
Frame = +2
Query: 143 DRYFNEPTQKNYEYIKKLFLRTKYMDDSIDYKDFNRRILL-IVFKFALNKSASYFPSYKE 319
D N+PT K +KK L+ ++ ++ D ++I+ K++ AS P E
Sbjct: 281 DAISNQPTPKKVSAVKKAKLQLTPVESALSLLDLMQKIIAESAEKYSPVFEASEVPKDPE 340
Query: 320 IIEVAIKR 343
I EV +K+
Sbjct: 341 IPEVEVKK 348
>Z81546-1|CAB04449.2| 859|Caenorhabditis elegans Hypothetical
protein F53A2.1 protein.
Length = 859
Score = 28.3 bits (60), Expect = 4.3
Identities = 20/85 (23%), Positives = 37/85 (43%), Gaps = 3/85 (3%)
Frame = +2
Query: 314 KEIIEVAIKRLNKINPDLK---SSPRAMLQHYNECLENLDNPVTDEHHLLTFGKEVATKI 484
+ I A+ N N +L + M + ++EC EN NPV + + + E +
Sbjct: 652 RTITHQAVSNWNAKNVNLNFRFGAHNVMAEKFHECPENFKNPVNIQ-FVAPWNIEPVSAN 710
Query: 485 FIEAFEYSYTNTNAISMDKTDEFDF 559
+E+ E T+ I + D+ D+
Sbjct: 711 LLESVEIKLQYTDDILLTIEDQLDY 735
>U53337-6|AAA96188.2| 510|Caenorhabditis elegans Acetylcholine
receptor protein 10 protein.
Length = 510
Score = 28.3 bits (60), Expect = 4.3
Identities = 12/39 (30%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
Frame = -1
Query: 193 FFNVFIVFLSWLIKIPVSGLFYNL*NV---CRQQIRIFD 86
F+ VF++++ WL+ + G+FY R++I FD
Sbjct: 282 FYKVFLIWIPWLLLMKRPGVFYKKRRATVQAREEISFFD 320
>AC025724-2|AAG23378.2| 167|Caenorhabditis elegans Hypothetical
protein Y67D8C.4 protein.
Length = 167
Score = 28.3 bits (60), Expect = 4.3
Identities = 14/51 (27%), Positives = 30/51 (58%), Gaps = 2/51 (3%)
Frame = +2
Query: 311 YKEIIEVAIKRLNKINPDLKSSPRAM--LQHYNECLENLDNPVTDEHHLLT 457
+KE+ ++ L+ I+ S+P+A+ L + C E++DNP+ + H ++
Sbjct: 49 HKELGRCPLEVLHSIHNFEPSTPQAVFELDESSNCQESIDNPMKRQKHFVS 99
>U59211-1|AAB09670.1| 420|Caenorhabditis elegans embryonic membrane
protein protein.
Length = 420
Score = 27.5 bits (58), Expect = 7.5
Identities = 12/21 (57%), Positives = 16/21 (76%)
Frame = -3
Query: 422 LDFPSIHCNAEALRAENSLNR 360
LDFPS+ AEALR+++S R
Sbjct: 132 LDFPSVISEAEALRSQDSETR 152
>U53343-3|AAA96220.2| 420|Caenorhabditis elegans Innexin protein 3
protein.
Length = 420
Score = 27.5 bits (58), Expect = 7.5
Identities = 12/21 (57%), Positives = 16/21 (76%)
Frame = -3
Query: 422 LDFPSIHCNAEALRAENSLNR 360
LDFPS+ AEALR+++S R
Sbjct: 132 LDFPSVISEAEALRSQDSETR 152
>AY150815-1|AAN61049.1| 964|Caenorhabditis elegans ADR-1C protein.
Length = 964
Score = 27.5 bits (58), Expect = 7.5
Identities = 18/68 (26%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
Frame = +2
Query: 143 DRYFNEPTQKNYEYIKKLFLRTKYMDDSIDYKDFNRRILL-IVFKFALNKSASYFPSYKE 319
D ++PT K +KK L+ ++ ++ D ++I+ K++ AS P E
Sbjct: 281 DAISHQPTPKKVSAVKKAKLQLTPVESALSLLDLMQKIIAESAEKYSPVFEASEVPKDPE 340
Query: 320 IIEVAIKR 343
I EV +K+
Sbjct: 341 IPEVEVKK 348
>AL132948-45|CAD31822.2| 542|Caenorhabditis elegans Hypothetical
protein Y39B6A.25 protein.
Length = 542
Score = 27.5 bits (58), Expect = 7.5
Identities = 19/60 (31%), Positives = 35/60 (58%), Gaps = 9/60 (15%)
Frame = +2
Query: 314 KEIIEVA------IKRLNKINPDL--KSSPRAMLQHYN-ECLENLDNPVTDEHHLLTFGK 466
+EIIEV I+ L + P+ K +++ +Y+ + L+NLD+P+ DE+ + +GK
Sbjct: 21 REIIEVPGGAEWKIRNLQETAPEFSWKYPGSSVIVNYHFKRLQNLDSPIFDENEKMFYGK 80
>U50312-3|AAA92320.2| 494|Caenorhabditis elegans Hypothetical
protein B0222.3 protein.
Length = 494
Score = 27.1 bits (57), Expect = 10.0
Identities = 9/14 (64%), Positives = 13/14 (92%)
Frame = -1
Query: 175 VFLSWLIKIPVSGL 134
+F+SW+I +PVSGL
Sbjct: 467 IFMSWVITLPVSGL 480
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,586,557
Number of Sequences: 27780
Number of extensions: 259691
Number of successful extensions: 727
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 701
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 727
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1247656244
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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