Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc19f05
(592 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g04620.1 68415.m00470 cation efflux family protein potential ... 32 0.25
At1g10880.1 68414.m01250 expressed protein contains Pfam profile... 29 1.8
At4g23370.1 68417.m03370 hypothetical protein predicted proteins... 29 2.3
At3g19516.1 68416.m02474 hypothetical protein 29 3.1
At2g16390.1 68415.m01876 SNF2 domain-containing protein / helica... 29 3.1
At3g22790.1 68416.m02873 kinase interacting family protein simil... 28 4.1
At5g24470.1 68418.m02884 pseudo-response regulator 5 (APRR5) ide... 28 5.4
At2g30940.2 68415.m03773 protein kinase family protein contains ... 28 5.4
At2g30940.1 68415.m03772 protein kinase family protein contains ... 28 5.4
At1g12290.1 68414.m01421 disease resistance protein (CC-NBS-LRR ... 28 5.4
At3g57380.1 68416.m06387 expressed protein contains Pfam domain,... 27 9.4
>At2g04620.1 68415.m00470 cation efflux family protein potential
member of the cation diffusion facilitator (CDF) family,
or cation efflux (CE) family, see PMID:11500563
Length = 798
Score = 32.3 bits (70), Expect = 0.25
Identities = 26/78 (33%), Positives = 42/78 (53%), Gaps = 2/78 (2%)
Frame = -2
Query: 249 LLKSL*SIESSMYFVRKN-NFLMYS*FF*VGSLKYL-SLAFSTISKMFAGNRSAFLIRAL 76
+L SL S+ S + F+R + +F ++ F V L +L SL+F+ IS + FL+R
Sbjct: 66 ILFSLRSLYSLLPFLRSSPSFSLFPFSFLVSLLSFLFSLSFTIISSFSPSKKDPFLLRLQ 125
Query: 75 HLSVISCLANVSTSTKLL 22
+ S S + S+ KLL
Sbjct: 126 NRSFSSISSLSSSQIKLL 143
>At1g10880.1 68414.m01250 expressed protein contains Pfam profile
PF03267: Arabidopsis protein of unknown function, DUF266
Length = 651
Score = 29.5 bits (63), Expect = 1.8
Identities = 19/82 (23%), Positives = 38/82 (46%), Gaps = 3/82 (3%)
Frame = +2
Query: 272 KFALNKSASYFPSYKEIIEVAIKRLNKI--NPDLKSSPRAMLQHYNECLENLDNPVTD-E 442
+ + SY E+ ++ K+ ++ + D+ S R HY + +E +N V + +
Sbjct: 344 RIRFGSNCSYEGEAMEVAKIGRKKTSRNVGHHDIVGSKRNQY-HYAKSIEENENMVKEMQ 402
Query: 443 HHLLTFGKEVATKIFIEAFEYS 508
+L KE+ K +I EY+
Sbjct: 403 QQMLQIDKEIREKTYISGLEYN 424
>At4g23370.1 68417.m03370 hypothetical protein predicted proteins,
Arabidopsis thaliana contains Pfam profile PF03080:
Arabidopsis proteins of unknown function
Length = 1021
Score = 29.1 bits (62), Expect = 2.3
Identities = 23/89 (25%), Positives = 39/89 (43%)
Frame = +2
Query: 188 KKLFLRTKYMDDSIDYKDFNRRILLIVFKFALNKSASYFPSYKEIIEVAIKRLNKINPDL 367
+K + + YM+D + Y D + LI+ A K PS E E+ ++L IN
Sbjct: 609 QKSYTKVAYMNDFVVYNDLGSEVTLILSAQA-TKERRPIPSKAERKEME-RQLKAINKPA 666
Query: 368 KSSPRAMLQHYNECLENLDNPVTDEHHLL 454
S + +C++ + +HHLL
Sbjct: 667 IKSLKTEYGDIFDCID-IHKQRAFDHHLL 694
>At3g19516.1 68416.m02474 hypothetical protein
Length = 143
Score = 28.7 bits (61), Expect = 3.1
Identities = 19/69 (27%), Positives = 36/69 (52%), Gaps = 2/69 (2%)
Frame = +2
Query: 128 VEKARD--RYFNEPTQKNYEYIKKLFLRTKYMDDSIDYKDFNRRILLIVFKFALNKSASY 301
+EK +D + E T+K+ + +K ++ SI+ K+ ++ F+F + S
Sbjct: 1 MEKLKDFEKRLRESTEKS-QNLKDYLGIIEFSKTSIETKELGADLIPRYFQFYTSHSNQA 59
Query: 302 FPSYKEIIE 328
F +YK+IIE
Sbjct: 60 FDAYKDIIE 68
>At2g16390.1 68415.m01876 SNF2 domain-containing protein / helicase
domain-containing protein low similarity to RAD54
[Drosophila melanogaster] GI:1765914; contains Pfam
profiles PF00271: Helicase conserved C-terminal domain,
PF00176: SNF2 family N-terminal domain
Length = 888
Score = 28.7 bits (61), Expect = 3.1
Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
Frame = +2
Query: 437 DEHHLLTFGKEVATKIFIEAFEY-SYTNTNAISMDKTDEFD-FIKQPTLK 580
+E H F KEV +K++ E EY Y N ++D + D F++ P L+
Sbjct: 830 EEDHNTCFKKEVISKMWFEWNEYCGYQNFEVETIDVDEAGDTFLESPALR 879
>At3g22790.1 68416.m02873 kinase interacting family protein similar
to kinase interacting protein 1 (GI:13936326) [Petunia
integrifolia]
Length = 1694
Score = 28.3 bits (60), Expect = 4.1
Identities = 21/73 (28%), Positives = 32/73 (43%), Gaps = 5/73 (6%)
Frame = +2
Query: 326 EVAIKRLNKINPDLKSSPRAMLQHYNECLE---NLDNPVTD-EHHLLTFGKEVA-TKIFI 490
E ++ L + + L S A L YN CLE NL+ V D E + F + A + I
Sbjct: 271 ETEVENLKQAHSRLHSEKEAGLAEYNRCLEMISNLEKKVRDAEENAQNFSNQSAKAEDEI 330
Query: 491 EAFEYSYTNTNAI 529
+A + N +
Sbjct: 331 KALRHELVKVNEV 343
>At5g24470.1 68418.m02884 pseudo-response regulator 5 (APRR5)
identical to pseudo-response regulator 5 GI:10281006
from [Arabidopsis thaliana]
Length = 667
Score = 27.9 bits (59), Expect = 5.4
Identities = 16/68 (23%), Positives = 35/68 (51%)
Frame = -2
Query: 219 SMYFVRKNNFLMYS*FF*VGSLKYLSLAFSTISKMFAGNRSAFLIRALHLSVISCLANVS 40
S ++ RKN L ++ F + L + + F T+S + S+ +I + C+ ++
Sbjct: 52 SPHYYRKNKVLFFALFSFISPLTNILICFVTVSLSLELSSSSSIIDLGFSKLSVCVVIMT 111
Query: 39 TSTKLLEV 16
+S +++EV
Sbjct: 112 SSEEVVEV 119
>At2g30940.2 68415.m03773 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 447
Score = 27.9 bits (59), Expect = 5.4
Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 5/51 (9%)
Frame = +2
Query: 281 LNKSASYFPSYKEIIEVAIKRLNKINPDLKSSPRA-----MLQHYNECLEN 418
L+ S FP+ KE+ + + L ++P+LK P+ MLQ ++ L N
Sbjct: 381 LDPSLPEFPTIKELKRIVLISLRCVDPELKERPKMGDVIHMLQPHDLLLNN 431
>At2g30940.1 68415.m03772 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 445
Score = 27.9 bits (59), Expect = 5.4
Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 5/51 (9%)
Frame = +2
Query: 281 LNKSASYFPSYKEIIEVAIKRLNKINPDLKSSPRA-----MLQHYNECLEN 418
L+ S FP+ KE+ + + L ++P+LK P+ MLQ ++ L N
Sbjct: 379 LDPSLPEFPTIKELKRIVLISLRCVDPELKERPKMGDVIHMLQPHDLLLNN 429
>At1g12290.1 68414.m01421 disease resistance protein (CC-NBS-LRR
class), putative domain signature CC-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 884
Score = 27.9 bits (59), Expect = 5.4
Identities = 14/40 (35%), Positives = 24/40 (60%)
Frame = -2
Query: 159 SLKYLSLAFSTISKMFAGNRSAFLIRALHLSVISCLANVS 40
SL+YL L++S+I ++ G + L+L + CL +VS
Sbjct: 590 SLRYLDLSYSSIGRLPVGLLKLKKLMHLNLESMLCLESVS 629
>At3g57380.1 68416.m06387 expressed protein contains Pfam domain,
PF04577: Protein of unknown function (DUF563)
Length = 504
Score = 27.1 bits (57), Expect = 9.4
Identities = 15/51 (29%), Positives = 29/51 (56%)
Frame = +2
Query: 164 TQKNYEYIKKLFLRTKYMDDSIDYKDFNRRILLIVFKFALNKSASYFPSYK 316
TQK ++Y KK++L + + +D K F R+ L + F++ + + S+K
Sbjct: 452 TQKGWDYTKKIYLERQNV--KLDLKRF-RKPLSRAYDFSMKRIGLVYISHK 499
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,519,191
Number of Sequences: 28952
Number of extensions: 223087
Number of successful extensions: 581
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 575
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 580
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1171109464
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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