Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc19f04
(627 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_46059| Best HMM Match : Astacin (HMM E-Value=2.8e-17) 31 0.77
SB_55885| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.1
SB_20195| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.1
SB_28153| Best HMM Match : Sec23_trunk (HMM E-Value=0.59) 29 4.1
SB_40726| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.1
SB_18791| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.1
SB_12085| Best HMM Match : TBP (HMM E-Value=3.5e-35) 27 9.4
SB_1013| Best HMM Match : Peptidase_M1 (HMM E-Value=0.041) 27 9.4
SB_39566| Best HMM Match : Pyocin_S (HMM E-Value=3.3) 27 9.4
>SB_46059| Best HMM Match : Astacin (HMM E-Value=2.8e-17)
Length = 1775
Score = 31.1 bits (67), Expect = 0.77
Identities = 19/67 (28%), Positives = 31/67 (46%)
Frame = +3
Query: 426 DNKLSQMYIAEKPLSIDDIVKEGSNKVGTNSIFLGTVYDYGVKSPNAASTSSNVTMTRGT 605
+ +L + +I K L+++ I K+ N GT+ + T DYG S N N R T
Sbjct: 1375 ERRLGKPHIGRKTLAVNKIDKDDDNDDGTDEVVKQTFDDYG--SRNEVVWHGNRIQERST 1432
Query: 606 ANFDIKE 626
++E
Sbjct: 1433 KRAALEE 1439
>SB_55885| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 301
Score = 29.1 bits (62), Expect = 3.1
Identities = 21/77 (27%), Positives = 38/77 (49%), Gaps = 4/77 (5%)
Frame = +3
Query: 288 ALNLNSLTEASPSLGQSSESVESDENKRLNVKLNN----ARVANLRIAHGDNKLSQMYIA 455
+L L L E P+L ++ +SD+ + ++L N R R+ GD Q+ +A
Sbjct: 77 SLGLQFLREEYPNLDENLIRFQSDQRGKTLIQLRNLGKGGRCKAGRVQAGDGVSCQLSVA 136
Query: 456 EKPLSIDDIVKEGSNKV 506
E ID +++E + +V
Sbjct: 137 E----IDAVIQENTERV 149
>SB_20195| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1351
Score = 28.7 bits (61), Expect = 4.1
Identities = 18/57 (31%), Positives = 29/57 (50%)
Frame = +3
Query: 330 GQSSESVESDENKRLNVKLNNARVANLRIAHGDNKLSQMYIAEKPLSIDDIVKEGSN 500
G SE++ +K ++ +NA+ L AHG LS+ + E L+ D V GS+
Sbjct: 833 GIQSENMRKLRSKAVDKATSNAKENALNAAHGAKALSEELLFEITLATVDQVVVGSD 889
>SB_28153| Best HMM Match : Sec23_trunk (HMM E-Value=0.59)
Length = 246
Score = 28.7 bits (61), Expect = 4.1
Identities = 18/57 (31%), Positives = 28/57 (49%)
Frame = +3
Query: 330 GQSSESVESDENKRLNVKLNNARVANLRIAHGDNKLSQMYIAEKPLSIDDIVKEGSN 500
G SE++ +K + NA+ L AHG LS+ + E L+ D+V GS+
Sbjct: 125 GIQSENMRKLRSKAGDKATGNAKENALNAAHGAKALSEALLFEITLATVDLVVVGSD 181
>SB_40726| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 290
Score = 27.9 bits (59), Expect = 7.1
Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Frame = -1
Query: 363 SRLIPPIR-CSALNWATPRLRNLNLMHSSNRDKSVRAKRSI 244
S ++PP R S+ W PR RNL + S R K R +R++
Sbjct: 156 SVVLPPHRLASSTKWTRPR-RNLEVGDISTRQKWTRPRRNL 195
>SB_18791| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 157
Score = 27.9 bits (59), Expect = 7.1
Identities = 25/113 (22%), Positives = 45/113 (39%), Gaps = 6/113 (5%)
Frame = +3
Query: 282 TNALNLNSLTEASPSLGQSSESVESDENKRLNVKLNNARVANLRIAHGDNKLSQMYIAEK 461
T + +S +EAS S V + + + + HG++ S +A K
Sbjct: 6 TKKADQDSGSEASSPAASDSTPVSESQKEESRRRSGRQSKQRILFGHGESPASTSSLARK 65
Query: 462 P------LSIDDIVKEGSNKVGTNSIFLGTVYDYGVKSPNAASTSSNVTMTRG 602
P +++D+ E ++ G +S F G+ ++P T T TRG
Sbjct: 66 PGSTKKRVTVDESGSEDEDRTGKSSDFEGSSDRSDDETP--TPTPKKNTPTRG 116
>SB_12085| Best HMM Match : TBP (HMM E-Value=3.5e-35)
Length = 440
Score = 27.5 bits (58), Expect = 9.4
Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Frame = +1
Query: 403 PICASHTAIIN*AKC-ILPKNRYL*TT*SKRAPTKWALTAFFWAPYTTMELNRQT 564
P+ +H+ II C K +T S+ APT TA F+ PY L R++
Sbjct: 190 PVAETHSCII---PCPTTQKTTTKPSTTSQDAPTNLTATAVFYLPYAVHRLKRKS 241
>SB_1013| Best HMM Match : Peptidase_M1 (HMM E-Value=0.041)
Length = 999
Score = 27.5 bits (58), Expect = 9.4
Identities = 15/46 (32%), Positives = 25/46 (54%)
Frame = +2
Query: 233 ENRVIDRFARTDLSLLDECIKFKFLNRGVAQFRAEQRIGGIRREQT 370
E R +DRF+ + + CI +F R A+ E R+ +R++QT
Sbjct: 852 ERRGVDRFSEKPQAQITRCIPHRF--RLTARHSKELRVCMLRQQQT 895
>SB_39566| Best HMM Match : Pyocin_S (HMM E-Value=3.3)
Length = 736
Score = 27.5 bits (58), Expect = 9.4
Identities = 18/57 (31%), Positives = 28/57 (49%)
Frame = +3
Query: 330 GQSSESVESDENKRLNVKLNNARVANLRIAHGDNKLSQMYIAEKPLSIDDIVKEGSN 500
G SE++ +K + +NA+ L AHG LS+ + E L+ D V GS+
Sbjct: 457 GVQSENMRKLRSKAGDKATSNAKENALNTAHGAKALSEALLFEITLATVDQVVVGSD 513
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,698,286
Number of Sequences: 59808
Number of extensions: 361990
Number of successful extensions: 888
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 848
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 888
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1560464625
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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