Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc19f04
         (627 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g36810.1 68415.m04514 expressed protein                             31   0.63 
At1g30260.1 68414.m03701 expressed protein                             30   1.1  
At5g23890.1 68418.m02806 expressed protein weak similarity to SP...    29   3.3  
At1g16970.1 68414.m02061 Ku70-like protein identical to Ku70-lik...    27   7.7  

>At2g36810.1 68415.m04514 expressed protein 
          Length = 1071

 Score = 31.1 bits (67), Expect = 0.63
 Identities = 15/35 (42%), Positives = 23/35 (65%)
 Frame = +2

Query: 173 NICTT*ISLELKL*IKTNHVENRVIDRFARTDLSL 277
           N CTT +S+E KL I+T +   +++D+F    LSL
Sbjct: 616 NACTTLVSVEPKLTIETRNRVMKILDQFFSISLSL 650


>At1g30260.1 68414.m03701 expressed protein
          Length = 97

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 15/45 (33%), Positives = 25/45 (55%)
 Frame = +3

Query: 477 DIVKEGSNKVGTNSIFLGTVYDYGVKSPNAASTSSNVTMTRGTAN 611
           D +KE   +VGT+SIF  +     + SP  +  SS+V+    +A+
Sbjct: 31  DTIKEEEREVGTDSIFPSSFNSKKISSPFTSPYSSSVSSASASAS 75


>At5g23890.1 68418.m02806 expressed protein weak similarity to
           SP|P12957 Caldesmon (CDM) {Gallus gallus}
          Length = 946

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 16/49 (32%), Positives = 25/49 (51%)
 Frame = +3

Query: 282 TNALNLNSLTEASPSLGQSSESVESDENKRLNVKLNNARVANLRIAHGD 428
           T    ++SLT    S+ QSS+ + SDE K  N + +N +  +  I   D
Sbjct: 120 TKKQEMHSLTSQQESMIQSSDEISSDEIKVANSEESNLKDEDKSIESND 168


>At1g16970.1 68414.m02061 Ku70-like protein identical to Ku70-like
           protein GI:12006424 from [Arabidopsis thaliana];
           contains Pfam profiles PF03731: Ku70/Ku80 N-terminal
           alpha/beta domain, PF02735: Ku70/Ku80 beta-barrel
           domain, PF03730: Ku70/Ku80 C-terminal arm, and PF02037:
           SAP domain; contains TIGRfam profile TIGR00578:
           ATP-dependent DNA helicase ii, 70 kDa subunit
          Length = 621

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = +3

Query: 291 LNLNSLTEASPSLGQSSESVESDENKRLNVK 383
           LN + LTE  PS+GQ  E ++    KR+  K
Sbjct: 234 LNSDELTEFMPSVGQKLEDMKDQLKKRVLAK 264


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,003,278
Number of Sequences: 28952
Number of extensions: 251650
Number of successful extensions: 704
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 692
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 704
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1275599520
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)