Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc19f01
         (678 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPMIT.06 |||mitochondrial DNA binding endonuclease|Schizosacchar...    33   0.029
SPAC1687.16c |erg3||C-5 sterol desaturase Erg3 |Schizosaccharomy...    27   3.3  
SPBC216.01c ||SPBC713.13c|DNA damage response protein |Schizosac...    27   3.3  
SPBC21B10.12 |rec6||meiotic recombination protein Rec6|Schizosac...    26   5.8  
SPAC14C4.07 |||membrane transporter|Schizosaccharomyces pombe|ch...    26   5.8  
SPCC757.05c |||acetylornithine deacetylase |Schizosaccharomyces ...    25   7.6  
SPAC13G6.06c |||glycine cleavage complex subunit P|Schizosacchar...    25   7.6  
SPBC1105.01 |rrp12|SPBPB7E8.03|rRNA processing protein Rrp12|Sch...    25   7.6  

>SPMIT.06 |||mitochondrial DNA binding
           endonuclease|Schizosaccharomyces pombe|chr
           mitochondrial|||Manual
          Length = 807

 Score = 33.5 bits (73), Expect = 0.029
 Identities = 41/186 (22%), Positives = 77/186 (41%)
 Frame = -2

Query: 653 RPVSLLPIFSKIIEKIIYEAINSYFEKHNLFTQEQKGFRRNKSINMAVHDLLKPIYYNLD 474
           RP+++     K++++I+   + + +E   LF     GFR  +S     H  L+ I+ N  
Sbjct: 308 RPLTIGSPRDKLVQEILRIVLEAIYEP--LFNTASHGFRPGRSC----HSALRSIFTNF- 360

Query: 473 NRTPTATLYMDMTKAFD*VDHKTLLDKLNAYGIRGNVHKLLKSYLTDRYQRVEIDNICPL 294
            +  T  +  D+   FD + H  L+  L++        +L++  L   Y          L
Sbjct: 361 -KGCTWWIEGDIKACFDSIPHDKLIALLSSKIKDQRFIQLIRKALNAGY----------L 409

Query: 293 SRTVQSYHSNWMKMQFGVPQGSVLGPLLFLIYINDFPKAIEHPMILFADDSTVIYKNFED 114
           +     Y         G PQGS++ P+L  IY++   + IE+    F     +  K   +
Sbjct: 410 TENRYKYDI------VGTPQGSIVSPILANIYLHQLDEFIENLKSEFDYKGPIARKRTSE 463

Query: 113 NRFTRF 96
           +R   +
Sbjct: 464 SRHLHY 469


>SPAC1687.16c |erg3||C-5 sterol desaturase Erg3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 300

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 20/75 (26%), Positives = 32/75 (42%)
 Frame = -2

Query: 650 PVSLLPIFSKIIEKIIYEAINSYFEKHNLFTQEQKGFRRNKSINMAVHDLLKPIYYNLDN 471
           P  L P F  +  K+ Y A+ ++    ++   + K    N  IN A H     IY+N  N
Sbjct: 178 PYHLFPFFFPL-HKLTYLALFTFVNFWSIMIHDGKYISNNPIINGAAHHNGHHIYFNY-N 235

Query: 470 RTPTATLYMDMTKAF 426
                TL+  +  +F
Sbjct: 236 YGQFTTLFDRLGNSF 250


>SPBC216.01c ||SPBC713.13c|DNA damage response protein
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 836

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 13/56 (23%), Positives = 24/56 (42%)
 Frame = -2

Query: 368 NVHKLLKSYLTDRYQRVEIDNICPLSRTVQSYHSNWMKMQFGVPQGSVLGPLLFLI 201
           N  + L   +    Q++E+ +I    +  +    NW+    G   G + GPL + I
Sbjct: 22  NEEEELDEAIAAALQKIEVPSIPRRVKVYEMEDENWVDCGTGYCDGKIEGPLAYFI 77


>SPBC21B10.12 |rec6||meiotic recombination protein
           Rec6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 182

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 17/34 (50%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
 Frame = -3

Query: 124 ILKTIDLQDFKQKLQVF-LLDKAYYSMSEYLDDN 26
           I K  DL+D KQKLQV    +   YS S  LDD+
Sbjct: 96  IHKFPDLEDSKQKLQVADDEENKQYSESSLLDDS 129


>SPAC14C4.07 |||membrane transporter|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 644

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 11/21 (52%), Positives = 16/21 (76%)
 Frame = -2

Query: 647 VSLLPIFSKIIEKIIYEAINS 585
           V+L P+ SK+IEKII +  +S
Sbjct: 449 VALFPLLSKVIEKIIEKLYSS 469


>SPCC757.05c |||acetylornithine deacetylase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 400

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = -2

Query: 413 HKTLLDKLNAYGIRGNVHKLLKSYLTDRYQRVEIDNI 303
           HK+L++  +  G   NV   LKSYL  +   VE+  +
Sbjct: 65  HKSLVEIESLGGNEVNVSDFLKSYLESKGLTVELQRV 101


>SPAC13G6.06c |||glycine cleavage complex subunit
           P|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1017

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 21/74 (28%), Positives = 33/74 (44%)
 Frame = -2

Query: 446 MDMTKAFD*VDHKTLLDKLNAYGIRGNVHKLLKSYLTDRYQRVEIDNICPLSRTVQSYHS 267
           M M  A D    KT L   N Y    N   +L++  +    ++E+DNI P   T  + H 
Sbjct: 205 MVMLMANDKKKRKTFLVDKNIYP---NTLSVLRTRASGFGIKIELDNITPELITKSAKHV 261

Query: 266 NWMKMQFGVPQGSV 225
             + +Q+    GS+
Sbjct: 262 FGIFVQYPAADGSI 275


>SPBC1105.01 |rrp12|SPBPB7E8.03|rRNA processing protein
           Rrp12|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1001

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 7/19 (36%), Positives = 14/19 (73%)
 Frame = -3

Query: 79  VFLLDKAYYSMSEYLDDNF 23
           +F L + +Y  S+Y+DD++
Sbjct: 813 IFALTRIFYEFSDYIDDDY 831


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,523,139
Number of Sequences: 5004
Number of extensions: 50004
Number of successful extensions: 133
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 133
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 311890690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)