Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc19f01
         (678 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_02_0297 - 13891954-13892556,13893019-13893855,13894179-138943...    39   0.003
07_03_1291 + 25545749-25546262,25546989-25547669,25547693-255477...    36   0.030
02_02_0078 + 6587491-6588021,6588160-6589151,6592430-6592607,659...    35   0.052
07_03_0800 + 21600050-21600106,21601506-21602663,21603029-21603520     29   3.4  

>06_02_0297 -
           13891954-13892556,13893019-13893855,13894179-13894394,
           13895455-13895874,13896198-13896506
          Length = 794

 Score = 39.1 bits (87), Expect = 0.003
 Identities = 25/98 (25%), Positives = 45/98 (45%)
 Frame = -2

Query: 671 EXIACYRPVSLLPIFSKIIEKIIYEAINSYFEKHNLFTQEQKGFRRNKSINMAVHDLLKP 492
           E +  +RP+SL+ I  KI+ K++   +     K  L +    GF + K+I        + 
Sbjct: 383 ETVNDFRPISLMGISLKIVTKLLAGRLQGVILK--LVSDNHYGFIKGKTIQDCPAWPFEY 440

Query: 491 IYYNLDNRTPTATLYMDMTKAFD*VDHKTLLDKLNAYG 378
           I+    ++     L +D  KAFD ++H  +L  +   G
Sbjct: 441 IHQCQQSKREIVLLKLDFEKAFDTIEHSAILSVMQHMG 478


>07_03_1291 +
           25545749-25546262,25546989-25547669,25547693-25547751,
           25549152-25549242,25549330-25549743,25550191-25550243,
           25550947-25551177,25551492-25551708,25551790-25551890,
           25552446-25552532,25553536-25553676,25553839-25553961,
           25554070-25554522,25554931-25555308,25555410-25556060,
           25556264-25556368,25556482-25556707,25557204-25557241
          Length = 1520

 Score = 35.9 bits (79), Expect = 0.030
 Identities = 39/162 (24%), Positives = 68/162 (41%), Gaps = 14/162 (8%)
 Frame = -2

Query: 554 EQKGFRRNKSINMAVHDLLKPIYYNLDNRTPTATLYMDMTKAFD*VDHKTLLDKLNAYGI 375
           +Q GF + + I+  +    + I      +  T  + +D  KAFD V+ ++L   L+  G 
Sbjct: 5   DQTGFLKGRCISENLIYATELIQACHARKCQTLIIKLDFAKAFDSVNWQSLFQILSVKGF 64

Query: 374 RGNVHKLLKSYLTDRYQRVEIDNICPLSRTVQSYHSNWMKMQFGVPQGSVLGPLLFLIYI 195
             N    +K+ L      V +  I             W+  + G+ QG  L P LF++  
Sbjct: 65  PDNWISWIKNLLQTSKSAVLLHGI----------PGKWITCKKGLRQGDPLSPYLFILVA 114

Query: 194 NDFPKAIE------HPM--------ILFADDSTVIYKNFEDN 111
           +   + +E      HP+        I +ADD+ VI +  ED+
Sbjct: 115 DVLQRLLERNLQIRHPIYHDRPCATIQYADDTLVICRAVEDD 156


>02_02_0078 +
           6587491-6588021,6588160-6589151,6592430-6592607,
           6592635-6592794,6592992-6593158,6593246-6593869
          Length = 883

 Score = 35.1 bits (77), Expect = 0.052
 Identities = 37/161 (22%), Positives = 73/161 (45%), Gaps = 4/161 (2%)
 Frame = -2

Query: 671 EXIACYRPVSLLPIFSKIIEKIIYEAINSYFEKHNLFTQEQKGFRRNKSI---NMAVHDL 501
           E ++ +RP+SL  +  KI  K++   +  +    ++ ++ Q  F   + I   ++  ++ 
Sbjct: 182 EHLSKFRPISLCNVLYKIASKVLANRLKLFLP--DIVSEFQSAFVPGRLITDSSLVAYEC 239

Query: 500 LKPIYYNLDNRTPTATLYMDMTKAFD*VDHKTLLDKLNAYGIRGN-VHKLLKSYLTDRYQ 324
           L  I     N+ P   L +DM KA+D ++   L   L   G   + ++ +++   + RY 
Sbjct: 240 LNTIKKQ-SNKKPFFALKIDMMKAYDRIEWSYLHGCLMRLGFEQDWINTVMRCVTSTRY- 297

Query: 323 RVEIDNICPLSRTVQSYHSNWMKMQFGVPQGSVLGPLLFLI 201
            + I+    L+ TV            G+ QG  + P LFL+
Sbjct: 298 AIRING--ELTDTVVPSR--------GIRQGDPISPYLFLL 328


>07_03_0800 + 21600050-21600106,21601506-21602663,21603029-21603520
          Length = 568

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 15/40 (37%), Positives = 22/40 (55%)
 Frame = -2

Query: 638 LPIFSKIIEKIIYEAINSYFEKHNLFTQEQKGFRRNKSIN 519
           LP  ++     +Y AI+ YF+ H   T+E+K  R  K IN
Sbjct: 385 LPAAARDCHDALYRAIDVYFQVHTRLTEEEK-MRICKGIN 423


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,411,671
Number of Sequences: 37544
Number of extensions: 262458
Number of successful extensions: 550
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 545
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 549
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1726796312
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)