Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc19f01
(678 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF100669-1|AAK39265.1| 931|Caenorhabditis elegans Hypothetical ... 82 3e-16
U58735-1|AAC48148.1| 891|Caenorhabditis elegans Hypothetical pr... 61 8e-10
AF054983-1|AAC72298.1| 1066|Caenorhabditis elegans reverse trans... 61 8e-10
AF025462-7|AAB71003.1| 805|Caenorhabditis elegans Hypothetical ... 61 8e-10
U58738-4|AAB00604.1| 358|Caenorhabditis elegans Hypothetical pr... 56 2e-08
AF036692-9|AAB88330.1| 389|Caenorhabditis elegans Hypothetical ... 50 1e-06
AF016663-3|AAC70878.1| 1170|Caenorhabditis elegans Hypothetical ... 36 0.020
AL110477-8|CAB76739.1| 1042|Caenorhabditis elegans Hypothetical ... 36 0.027
AL132877-13|CAC70110.4| 478|Caenorhabditis elegans Hypothetical... 29 3.0
Z73976-2|CAA98285.1| 360|Caenorhabditis elegans Hypothetical pr... 27 9.3
Z66515-8|CAD59154.1| 488|Caenorhabditis elegans Hypothetical pr... 27 9.3
Z66515-7|CAA91351.1| 460|Caenorhabditis elegans Hypothetical pr... 27 9.3
Z49069-1|CAA88864.1| 1696|Caenorhabditis elegans Hypothetical pr... 27 9.3
>AF100669-1|AAK39265.1| 931|Caenorhabditis elegans Hypothetical
protein R11E3.3 protein.
Length = 931
Score = 82.2 bits (194), Expect = 3e-16
Identities = 61/189 (32%), Positives = 87/189 (46%), Gaps = 4/189 (2%)
Frame = -2
Query: 677 DKEXIACYRPVSLLPIFSKIIEKIIYEAINSYFEKHNLFTQEQKGFRRNKSINMAVHDLL 498
D + YRP+SLL +K++EK I + I + E Q GF+ S AV +
Sbjct: 398 DPAIASSYRPISLLSPIAKLLEKAILKRIKNSIES----PAHQHGFKPEHSTTTAVIQVT 453
Query: 497 KPIYYNLDNRTPTATLYM---DMTKAFD*VDHKTLL-DKLNAYGIRGNVHKLLKSYLTDR 330
I L+ + P M D+ AFD V K L D + A GI + L +YL R
Sbjct: 454 NDIIGGLNMKNPPERAIMACLDLRAAFDKVPTKKLCNDLMEAQGIEPKIKLWLGNYLHKR 513
Query: 329 YQRVEIDNICPLSRTVQSYHSNWMKMQFGVPQGSVLGPLLFLIYINDFPKAIEHPMILFA 150
R DN + S W + GVPQGSV+ P LF Y+ D P + +I +A
Sbjct: 514 LIRTSHDN----------HWSKWHTLLGGVPQGSVISPNLFTFYLKDMPTQQDTMLISYA 563
Query: 149 DDSTVIYKN 123
DD ++I ++
Sbjct: 564 DDMSIIARD 572
>U58735-1|AAC48148.1| 891|Caenorhabditis elegans Hypothetical
protein F20B4.7 protein.
Length = 891
Score = 60.9 bits (141), Expect = 8e-10
Identities = 45/157 (28%), Positives = 72/157 (45%)
Frame = -2
Query: 677 DKEXIACYRPVSLLPIFSKIIEKIIYEAINSYFEKHNLFTQEQKGFRRNKSINMAVHDLL 498
D+E + YRP+ LLP+ K+ K + + ++ EQ GFRR+ S +H L
Sbjct: 445 DRENLENYRPICLLPVLYKVFTKCLLNRMRRSLDEAQ--PVEQAGFRRSFSTIDHIHSLQ 502
Query: 497 KPIYYNLDNRTPTATLYMDMTKAFD*VDHKTLLDKLNAYGIRGNVHKLLKSYLTDRYQRV 318
+ + + + P +++D KAFD V+H+ + L+ G G LLK + Y+
Sbjct: 503 RLLEVGREYQIPLTLVFIDFKKAFDTVEHQAIWKSLDEQGADGAYIDLLK----ECYKNC 558
Query: 317 EIDNICPLSRTVQSYHSNWMKMQFGVPQGSVLGPLLF 207
N P R V + + GV QG + P LF
Sbjct: 559 -TTNFTPFHRPVA------VPVTKGVRQGDPISPNLF 588
>AF054983-1|AAC72298.1| 1066|Caenorhabditis elegans reverse
transcriptase protein.
Length = 1066
Score = 60.9 bits (141), Expect = 8e-10
Identities = 45/157 (28%), Positives = 72/157 (45%)
Frame = -2
Query: 677 DKEXIACYRPVSLLPIFSKIIEKIIYEAINSYFEKHNLFTQEQKGFRRNKSINMAVHDLL 498
D+E + YRP+ LLP+ K+ K + + ++ EQ GFRR+ S +H L
Sbjct: 616 DRENLENYRPICLLPVLYKVFTKCLLNRMRRSLDEAQ--PVEQAGFRRSFSTIDHIHSLQ 673
Query: 497 KPIYYNLDNRTPTATLYMDMTKAFD*VDHKTLLDKLNAYGIRGNVHKLLKSYLTDRYQRV 318
+ + + + P +++D KAFD V+H+ + L+ G G LLK + Y+
Sbjct: 674 RLLEVGREYQIPLTLVFIDFKKAFDSVEHQAIWKSLDEQGADGAYIDLLK----ECYKNC 729
Query: 317 EIDNICPLSRTVQSYHSNWMKMQFGVPQGSVLGPLLF 207
N P R V + + GV QG + P LF
Sbjct: 730 -TTNFTPFHRPVA------VPVTKGVRQGDPISPNLF 759
>AF025462-7|AAB71003.1| 805|Caenorhabditis elegans Hypothetical
protein K10F12.5 protein.
Length = 805
Score = 60.9 bits (141), Expect = 8e-10
Identities = 45/157 (28%), Positives = 72/157 (45%)
Frame = -2
Query: 677 DKEXIACYRPVSLLPIFSKIIEKIIYEAINSYFEKHNLFTQEQKGFRRNKSINMAVHDLL 498
D+E + YRP+ LLP+ K+ K + + ++ EQ GFRR+ S +H L
Sbjct: 355 DRENLENYRPICLLPVLYKVFTKCLLNRMRRSLDEAQ--PVEQAGFRRSFSTIDHIHSLQ 412
Query: 497 KPIYYNLDNRTPTATLYMDMTKAFD*VDHKTLLDKLNAYGIRGNVHKLLKSYLTDRYQRV 318
+ + + + P +++D KAFD V+H+ + L+ G G LLK + Y+
Sbjct: 413 RLLEVGREYQIPLTLVFIDFKKAFDSVEHQAIWKSLDEQGADGAYIDLLK----ECYKNC 468
Query: 317 EIDNICPLSRTVQSYHSNWMKMQFGVPQGSVLGPLLF 207
N P R V + + GV QG + P LF
Sbjct: 469 -TTNFTPFHRPVA------VPVTKGVRQGDPISPNLF 498
>U58738-4|AAB00604.1| 358|Caenorhabditis elegans Hypothetical
protein F31A9.6 protein.
Length = 358
Score = 56.0 bits (129), Expect = 2e-08
Identities = 40/116 (34%), Positives = 60/116 (51%), Gaps = 2/116 (1%)
Frame = -2
Query: 482 NLDNRTPTATLYMDMTKAFD*VDHKTLLDKLNAYGIRGNVHKLLKSYLTDRYQRVEIDNI 303
++D+ +Y+D +KAFD + H LLDKL + N+ + +L++R RV I
Sbjct: 7 SIDHGEQIDIIYLDFSKAFDRLPHDLLLDKLVSLRKNKNLLIWVNEFLSNRSFRVRI--- 63
Query: 302 CPLSRTVQSYHSNWMKMQFGVPQGSVLGPLLFLIYINDFPKAIEHPMIL--FADDS 141
+T+ S GVPQG+VL PLLF IY+ND + + FADD+
Sbjct: 64 ---GQTLSSRKF----ATCGVPQGAVLSPLLFGIYVNDISSILPEKVACKQFADDT 112
>AF036692-9|AAB88330.1| 389|Caenorhabditis elegans Hypothetical
protein C44B12.7 protein.
Length = 389
Score = 50.4 bits (115), Expect = 1e-06
Identities = 40/104 (38%), Positives = 53/104 (50%), Gaps = 4/104 (3%)
Frame = -2
Query: 434 KAFD*VDHKTLLDKLNAYGIRGNVHKLLKSYLTDRYQRVEIDN-ICPLSRTVQSYHSNWM 258
KAFD V+H LL KL+ +GI +L+ R V+++N I P + S
Sbjct: 2 KAFDQVNHSLLLQKLHDFGINPLFCNWFHDFLSSRTFSVKVNNHIDPNIHPISS------ 55
Query: 257 KMQFGVPQGSVLGPLLFLIYINDFPKAIEHPMI---LFADDSTV 135
GVP+GSV GP LFLI+IN ++ P I FADD V
Sbjct: 56 ----GVPKGSVSGPFLFLIFINSLLLSVP-PSISCSAFADDLKV 94
>AF016663-3|AAC70878.1| 1170|Caenorhabditis elegans Hypothetical
protein F21E9.1 protein.
Length = 1170
Score = 36.3 bits (80), Expect = 0.020
Identities = 19/41 (46%), Positives = 26/41 (63%), Gaps = 2/41 (4%)
Frame = -2
Query: 245 GVPQGSVLGPLLFLIYIND--FPKAIEHPMILFADDSTVIY 129
GVPQGSV GPLLF+++IN+ A + FADD + +
Sbjct: 880 GVPQGSVSGPLLFILFINNLLIDLAPTINISCFADDVKIFH 920
>AL110477-8|CAB76739.1| 1042|Caenorhabditis elegans Hypothetical
protein Y113G7B.12 protein.
Length = 1042
Score = 35.9 bits (79), Expect = 0.027
Identities = 21/87 (24%), Positives = 44/87 (50%)
Frame = -2
Query: 452 LYMDMTKAFD*VDHKTLLDKLNAYGIRGNVHKLLKSYLTDRYQRVEIDNICPLSRTVQSY 273
++ ++ AFD V H+ L+ KLN + + + + ++ + V++++ ++S
Sbjct: 890 IHFKLSTAFDKVPHEFLISKLNDFNVHPTLRNWFRKLMSPKTFSVQVND------HLESE 943
Query: 272 HSNWMKMQFGVPQGSVLGPLLFLIYIN 192
N Q G P+GS +FL++IN
Sbjct: 944 KHN---CQIGAPRGSESRQFMFLVFIN 967
>AL132877-13|CAC70110.4| 478|Caenorhabditis elegans Hypothetical
protein Y105E8B.8a protein.
Length = 478
Score = 29.1 bits (62), Expect = 3.0
Identities = 15/35 (42%), Positives = 20/35 (57%)
Frame = -2
Query: 401 LDKLNAYGIRGNVHKLLKSYLTDRYQRVEIDNICP 297
+DKLN + I V KLLK R+ +V +D CP
Sbjct: 47 IDKLNNHRIYEKVQKLLKKDFF-RFYKVNMDKTCP 80
>Z73976-2|CAA98285.1| 360|Caenorhabditis elegans Hypothetical
protein T07C12.6 protein.
Length = 360
Score = 27.5 bits (58), Expect = 9.3
Identities = 14/59 (23%), Positives = 33/59 (55%), Gaps = 4/59 (6%)
Frame = -2
Query: 314 IDNIC-PLSRTVQSYHSNWMKMQ---FGVPQGSVLGPLLFLIYINDFPKAIEHPMILFA 150
I+++C + +Q +H N++ + FG+ +++G ++ ++Y K I+H + FA
Sbjct: 46 INSVCLKVYLKIQLFHYNFIILSIPMFGLWYEAIIGKMIVMLYNLKILKVIDHEIYFFA 104
>Z66515-8|CAD59154.1| 488|Caenorhabditis elegans Hypothetical
protein R53.7b protein.
Length = 488
Score = 27.5 bits (58), Expect = 9.3
Identities = 18/66 (27%), Positives = 30/66 (45%), Gaps = 7/66 (10%)
Frame = -2
Query: 599 EAINSYFEKHNLFTQEQKGFRR---NKSINMAVHDLLKPIYYN----LDNRTPTATLYMD 441
EA+ +KH F + GFRR N S + + +PI +N +D +T YM
Sbjct: 113 EAVYDLRDKHAHFYDDDNGFRRPRSNSSDLLILRKTSRPISFNVVGVIDQKTDPYHQYMS 172
Query: 440 MTKAFD 423
+ ++
Sbjct: 173 VVDVYE 178
>Z66515-7|CAA91351.1| 460|Caenorhabditis elegans Hypothetical
protein R53.7a protein.
Length = 460
Score = 27.5 bits (58), Expect = 9.3
Identities = 18/66 (27%), Positives = 30/66 (45%), Gaps = 7/66 (10%)
Frame = -2
Query: 599 EAINSYFEKHNLFTQEQKGFRR---NKSINMAVHDLLKPIYYN----LDNRTPTATLYMD 441
EA+ +KH F + GFRR N S + + +PI +N +D +T YM
Sbjct: 85 EAVYDLRDKHAHFYDDDNGFRRPRSNSSDLLILRKTSRPISFNVVGVIDQKTDPYHQYMS 144
Query: 440 MTKAFD 423
+ ++
Sbjct: 145 VVDVYE 150
>Z49069-1|CAA88864.1| 1696|Caenorhabditis elegans Hypothetical protein
K12D12.2 protein.
Length = 1696
Score = 27.5 bits (58), Expect = 9.3
Identities = 10/21 (47%), Positives = 18/21 (85%)
Frame = +3
Query: 90 CLKSCKSIVFKIFIDDGAIIG 152
CL++ K++V++I I+D A+IG
Sbjct: 1628 CLETAKALVYEISINDEALIG 1648
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,561,619
Number of Sequences: 27780
Number of extensions: 267072
Number of successful extensions: 615
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 588
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 608
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1539654388
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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