Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc19f01
         (678 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g34240.1 68415.m04189 hypothetical protein contains Pfam prof...    32   0.30 
At3g25010.1 68416.m03126 disease resistance family protein conta...    32   0.40 
At3g50840.1 68416.m05567 phototropic-responsive NPH3 family prot...    31   0.70 
At4g28080.1 68417.m04027 expressed protein                             29   3.7  
At5g15340.1 68418.m01796 pentatricopeptide (PPR) repeat-containi...    28   4.9  
At1g48950.1 68414.m05485 expressed protein                             27   8.6  

>At2g34240.1 68415.m04189 hypothetical protein contains Pfam
           profiles PF04780: Protein of unknown function (DUF629),
           PF04781: Protein of unknown function (DUF627)
          Length = 712

 Score = 32.3 bits (70), Expect = 0.30
 Identities = 24/84 (28%), Positives = 42/84 (50%), Gaps = 4/84 (4%)
 Frame = -2

Query: 629 FSKIIEKIIYEAINSYFEK-HNLFTQEQKGFRRNKSINMAVH---DLLKPIYYNLDNRTP 462
           +S+ ++  +Y  I+   +K H   T    G   N+ + +      DLLK  + NLD++T 
Sbjct: 149 YSESLKTELYTFIDLATKKMHAAVTVSDTGTLANRMVTIKKDPSFDLLKTFWVNLDDKTK 208

Query: 461 TATLYMDMTKAFD*VDHKTLLDKL 390
              L +D  K  D V++K  +DK+
Sbjct: 209 RELLVVDSRKLIDYVENK-YVDKV 231


>At3g25010.1 68416.m03126 disease resistance family protein contains
           leucine rich-repeat (LRR) domains (23 copies)
           Pfam:PF00560, INTERPRO:IPR001611; similar to Hcr2-5D
           [Lycopersicon esculentum] gi|3894393|gb|AAC78596
          Length = 881

 Score = 31.9 bits (69), Expect = 0.40
 Identities = 17/58 (29%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
 Frame = +3

Query: 504 VMYSHIN*FISSETFLLLCK*IMFFKVGVNSFVNNFL-YNFGKNGK*RYRSITSNXFF 674
           V Y+H +  ++  + L     + +  +G NSF ++ L Y FG   K     ++SN FF
Sbjct: 177 VSYNHFSGILNPNSSLFELHHLTYLSLGSNSFTSSTLPYEFGNLNKLELLDVSSNSFF 234


>At3g50840.1 68416.m05567 phototropic-responsive NPH3 family protein
           contains NPH3 family domain, Pfam:PF03000
          Length = 569

 Score = 31.1 bits (67), Expect = 0.70
 Identities = 11/37 (29%), Positives = 23/37 (62%)
 Frame = -2

Query: 656 YRPVSLLPIFSKIIEKIIYEAINSYFEKHNLFTQEQK 546
           Y    LLP+ +++ +  +Y A++ YF+ H+   +E+K
Sbjct: 382 YNLAVLLPVQARVYDDGLYRAVDIYFKTHSWILEEEK 418


>At4g28080.1 68417.m04027 expressed protein
          Length = 1660

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 16/48 (33%), Positives = 24/48 (50%)
 Frame = -2

Query: 674 KEXIACYRPVSLLPIFSKIIEKIIYEAINSYFEKHNLFTQEQKGFRRN 531
           K+ + C+  V LL   S+  +   Y+A+   F +HN F     GFR N
Sbjct: 69  KQQLLCHSLVELLQQISRPFDAA-YDALMKAFIEHNKFGNLPYGFRAN 115


>At5g15340.1 68418.m01796 pentatricopeptide (PPR) repeat-containing
           protein contains INTERPRO:IPR002885 PPR repeats
          Length = 623

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 17/41 (41%), Positives = 24/41 (58%)
 Frame = -2

Query: 425 D*VDHKTLLDKLNAYGIRGNVHKLLKSYLTDRYQRVEIDNI 303
           D VD  TLL   + YG+  N  KL   ++  R +RVEID++
Sbjct: 75  DNVDWTTLLSSFSRYGLLVNSMKL---FVEMRRKRVEIDDV 112


>At1g48950.1 68414.m05485 expressed protein
          Length = 608

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 9/24 (37%), Positives = 21/24 (87%)
 Frame = -3

Query: 157 SLPMIAPSSIKILKTIDLQDFKQK 86
           +LP+I+PS+I+ +++ DL++F ++
Sbjct: 217 ALPVISPSAIEYMRSSDLEEFLKR 240


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,488,590
Number of Sequences: 28952
Number of extensions: 238596
Number of successful extensions: 504
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 497
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 504
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1428369392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)