Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc19e21
         (610 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF016419-9|AAG24054.1| 2025|Caenorhabditis elegans Hypothetical ...    28   4.5  
Z34533-6|CAA84300.2|  371|Caenorhabditis elegans Hypothetical pr...    28   6.0  
U97000-9|AAC47998.1|  345|Caenorhabditis elegans Seven tm recept...    28   6.0  
AY158690-1|AAN41642.1|  371|Caenorhabditis elegans choline kinas...    28   6.0  
AF067219-7|AAC17026.2|  372|Caenorhabditis elegans Innexin prote...    28   6.0  
AC006689-1|AAF39971.2|  257|Caenorhabditis elegans Hypothetical ...    28   6.0  

>AF016419-9|AAG24054.1| 2025|Caenorhabditis elegans Hypothetical
           protein F07G11.9 protein.
          Length = 2025

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 32/132 (24%), Positives = 54/132 (40%), Gaps = 8/132 (6%)
 Frame = -1

Query: 601 KHFKIAGARVWPLDKNEHSSDKPVDRDLNIAYLASSCSKVRPFRFYHQTQNCDRLNRHRK 422
           KH + AGA    +D ++  + KP D   +I    S     + F   +   +CD+L   ++
Sbjct: 317 KHKREAGAATSEVDCSKKITVKPGDTCFSI--WTSQKMTQQQFMDINPELDCDKLEIGKE 374

Query: 421 VCAAQPFV*LGQN--RHN*DRP-QTRIPYTV-----ETCIALWQRPPRILNRELDIYNRL 266
           VC       +G N   +  + P QT+ P  V     +TC  +W        + +D+  RL
Sbjct: 375 VCVTGN---VGNNIQENVLEAPVQTQCPRKVKINPGDTCFNIWTSQRMTQQQFMDLNKRL 431

Query: 265 ICKHCGTRRREC 230
            C      +  C
Sbjct: 432 DCDKLEVGKEVC 443


>Z34533-6|CAA84300.2|  371|Caenorhabditis elegans Hypothetical
           protein B0285.8 protein.
          Length = 371

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 15/54 (27%), Positives = 23/54 (42%)
 Frame = +1

Query: 220 NGDNIPDAACRNAYKSVYYKYRALDLESGAAAATAQYMFQQYMEYASVAGPNYD 381
           + D I D        +VY KY A+D+         Q M +   EY  + G +Y+
Sbjct: 117 DSDCILDPEISRRVGAVYPKYHAIDVPVSKKRRCFQVMRESLKEYQDLGGGDYE 170


>U97000-9|AAC47998.1|  345|Caenorhabditis elegans Seven tm receptor
           protein 135 protein.
          Length = 345

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 21/74 (28%), Positives = 35/74 (47%)
 Frame = +2

Query: 242 PRAAMLTNQSIINIELSI*NPGRPLPQRNTCFNSIWNTRLWPVLIMTILT*SNKGLCRTH 421
           P   M  +  ++ +  SI N   PL +  TC + + +  +  +L    +      +CRTH
Sbjct: 67  PVGHMKGSMFVVFMHSSILNATNPLAEFLTCLHCVLSGFVASLLACQFIF-RYLAVCRTH 125

Query: 422 FAVPVQTIAILCLV 463
           F V +Q I  LCL+
Sbjct: 126 FLVHLQGIN-LCLL 138


>AY158690-1|AAN41642.1|  371|Caenorhabditis elegans choline kinase
           CKB-1 protein.
          Length = 371

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 15/54 (27%), Positives = 23/54 (42%)
 Frame = +1

Query: 220 NGDNIPDAACRNAYKSVYYKYRALDLESGAAAATAQYMFQQYMEYASVAGPNYD 381
           + D I D        +VY KY A+D+         Q M +   EY  + G +Y+
Sbjct: 117 DSDCILDPEISRRVGAVYPKYHAIDVPVSKKRRCFQVMRESLKEYQDLGGGDYE 170


>AF067219-7|AAC17026.2|  372|Caenorhabditis elegans Innexin protein
           16 protein.
          Length = 372

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 9/32 (28%), Positives = 17/32 (53%)
 Frame = +1

Query: 187 CFKDGNFYWPHNGDNIPDAACRNAYKSVYYKY 282
           CF +  ++ P    N+P A  R   + +YY++
Sbjct: 74  CFIENTYFVPMQDSNLPAAETREGREMIYYQW 105


>AC006689-1|AAF39971.2|  257|Caenorhabditis elegans Hypothetical
           protein T22E7.2 protein.
          Length = 257

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 12/42 (28%), Positives = 21/42 (50%)
 Frame = -1

Query: 559 KNEHSSDKPVDRDLNIAYLASSCSKVRPFRFYHQTQNCDRLN 434
           K+EH   KP + +     + +S   +   R Y +T++C R N
Sbjct: 16  KSEHFVRKPYESEAGRHVITNSFCSICEVRTYRETKHCKRCN 57


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,870,069
Number of Sequences: 27780
Number of extensions: 293278
Number of successful extensions: 706
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 693
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 706
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1311096392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)